Cova015205.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- -
- Assembly
- GCA_032441825.1
- Location
- CM063740.1:7816064-7818544[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.4e+02 3.5 0.2 6 21 10 25 5 26 0.84 2 13 0.16 17 6.5 0.2 2 20 32 50 31 52 0.88 3 13 3.8 3.9e+02 2.2 1.4 1 11 141 151 141 161 0.87 4 13 0.1 11 7.1 2.3 2 19 356 373 355 376 0.92 5 13 0.0022 0.23 12.3 0.8 1 23 408 430 408 430 0.96 6 13 0.58 60 4.7 5.5 1 23 466 488 466 488 0.94 7 13 0.00022 0.022 15.5 0.5 2 23 499 520 498 520 0.96 8 13 0.0024 0.24 12.2 1.0 1 23 531 553 531 553 0.97 9 13 2.9e-06 0.0003 21.4 1.8 1 23 559 581 559 581 0.97 10 13 0.052 5.4 8.0 1.4 1 23 587 611 587 611 0.94 11 13 0.0024 0.25 12.2 1.8 1 23 617 639 617 639 0.97 12 13 0.00012 0.012 16.3 6.8 1 23 643 665 643 665 0.98 13 13 0.024 2.5 9.1 0.5 1 23 672 695 672 695 0.96
Sequence Information
- Coding Sequence
- ATGGAGAGCGTCGCGTGCCCACTCTGTTGCGAAGACAGGTTTTCCAATCAAGACCTACTGAAGTATCATTTATTGAGTTTGACTACAAACATCCAGTGTCCTTTTTGCGGAAAACAGTGCGATGATATCAACACGTTGGTCGGGCATTTGGGCAAGATGTGTGCGGACAAAGACGAAGCCGAGAAATGTATGCAAGACAATGAAATGATCGTCGTTTATCCTGatgatgACGAACCAGAGTCGGAAAATGTAATTGACGAGTACGACAATTTAGTGAAGGAAGAAGATTATCAAAATGATGAACAACAAAATGAGGCTGACGCGGACGCAGAGGATAAAGATTGCATTGAAGACTTCAACGACGATCCAAATCAAATGGCACAGGCGTCGGAAAGTGAATCTCCGGATAAATCACATCTCTATCACTGTTCTGAATGTAATATAAACTTCCCGTCCATTCAAAAACACATCGATGAATGCCATAAAGATCAAGAAGTAGTGTTTCAGGTCACCGATAACGAAGACGTTACCGATACATTTCAAGATGTAGACGATACCAATAATAAATCTCATCTAGGATCTTGGATAAAATGGGGAAATGGTTACTTTTATACGAAACACAAATATATGGTATTGGACCATTTGAACGCTAAAACTTTggatattatcaataatggATCGGAagaaacaaacattttaaattctagtTCAGAAACAATAGAACACTTGTATCAAAATGATCCTTATATAACTACCAAAAAGTATTCAAATCATTGCATTACTGATGCATACGGCGATCGGTATTACGATGTTCCTATTTATTTACTTCACCAACAAAGTGACGAtgttaatgattattttcaagtCGAAGCCCgtaaattaagttttaaaaaacggCTTCGtcttatacgattaaaatcgtataatactgGTTTTGagattgaacaaatattatttcaaaacaaaccCACTAACAGCAACATAATTCCAATGTTAGAAAATTCATTGGAACATAATGAATACACTCAAGTAGCACATTTGGAAAATTGCATTTTACTACATTGGAAATGTACAATCTGTAATGTAAAATCTGATCATTGGTCCAAGTTAGTCAAGCATAATTGCAAAACGGATGAATCGACCGTGCCAAAGTctcaaaatgaaaacaaaaattctccTCTGAGAAGCAATGGTCGATCGGTTTCTACAATTCGTTCGCAACATATTTGTCCACATTGTAGTGGAGAGTTTGATTCAGAAGGTTATTTAAGAACACATCTTTTAGTACATGCAAATGATTCAAATAAATGCCCATTTTGTGATCAACCAGTGGCACCAGAAATGATGGACACGCATTTAATTGCTCATCAAAATCCTGAATTTTCTAACTTAAAATTCTTATGCAATGTGTGCAATAAGTGTTACGAGTCTGAATTTCGTCTCCAGTGTCATCAAAGAGCGCACGAAATGCGACGTAAACCACGTGAAATATTAGTTTGCGATGTTTGTAATGCAGAATTCaatgataaaaattctttaaaacatCATGCCATAACGCATATTGAACCTCCTGAACGTTTACGTCGATTACACGAATGCCGTTTTTGTGGGAAAACTTTTGTAAAACCTATTGAAAaggtAAATCATGAAAGAGTACACACTGGTGAAAAACCTTTTGCCTGTTCAGTCTGTGGACGTTGTTTCAGACTCAAGGATCTTGTACAAAAACATATGCGTGTACATACCAAAGAACGACCTTATAAATGCCGTCACGAAGGTTGTGAAAAAACATTTAGCGCATCGAGCAGTAGAGTTAATCACGAACAAGGCCATTCTGGtatcaaacaatttaaatgtttttattgccCAAGATATTTTAAGAATTGGGTGTCGAGAAGTAATCATGTTCAAGAGCACATGGTACAGCACAAGTGTGATATATGTGATCGTTCATTCGtatcattttgtaattataaaaaacatttaaaaatgcatGCAGAAGGACGGCTCAAATTCAAATGTATGATTTGTCGTCAAGCATTTGgaagacaattatttttagataatcATCTGTCTAGTGAACATCAAATGAAGTCACATAAAGAACATGTAACAActatataa
- Protein Sequence
- MESVACPLCCEDRFSNQDLLKYHLLSLTTNIQCPFCGKQCDDINTLVGHLGKMCADKDEAEKCMQDNEMIVVYPDDDEPESENVIDEYDNLVKEEDYQNDEQQNEADADAEDKDCIEDFNDDPNQMAQASESESPDKSHLYHCSECNINFPSIQKHIDECHKDQEVVFQVTDNEDVTDTFQDVDDTNNKSHLGSWIKWGNGYFYTKHKYMVLDHLNAKTLDIINNGSEETNILNSSSETIEHLYQNDPYITTKKYSNHCITDAYGDRYYDVPIYLLHQQSDDVNDYFQVEARKLSFKKRLRLIRLKSYNTGFEIEQILFQNKPTNSNIIPMLENSLEHNEYTQVAHLENCILLHWKCTICNVKSDHWSKLVKHNCKTDESTVPKSQNENKNSPLRSNGRSVSTIRSQHICPHCSGEFDSEGYLRTHLLVHANDSNKCPFCDQPVAPEMMDTHLIAHQNPEFSNLKFLCNVCNKCYESEFRLQCHQRAHEMRRKPREILVCDVCNAEFNDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACSVCGRCFRLKDLVQKHMRVHTKERPYKCRHEGCEKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVQHKCDICDRSFVSFCNYKKHLKMHAEGRLKFKCMICRQAFGRQLFLDNHLSSEHQMKSHKEHVTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330857;
- 90% Identity
- -
- 80% Identity
- -