Cova013203.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- -
- Assembly
- GCA_032441825.1
- Location
- CM063737.1:7062800-7066042[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.64 66 4.6 4.8 1 20 278 297 278 300 0.95 2 14 0.02 2 9.3 0.7 1 23 306 328 306 328 0.92 3 14 0.0061 0.62 11.0 0.1 1 23 402 424 402 424 0.97 4 14 2.1 2.2e+02 3.0 4.0 1 23 429 451 429 451 0.89 5 14 0.00018 0.019 15.7 5.0 1 23 504 527 504 527 0.96 6 14 0.071 7.4 7.6 2.8 2 23 580 601 579 601 0.96 7 14 0.0046 0.47 11.3 0.5 1 22 607 628 607 628 0.96 8 14 0.00095 0.098 13.5 0.1 2 23 684 706 683 706 0.94 9 14 0.032 3.3 8.7 5.3 1 23 712 734 712 734 0.95 10 14 0.0018 0.18 12.6 0.8 2 20 759 777 758 779 0.94 11 14 8.3e-05 0.0085 16.8 2.2 2 23 804 826 804 826 0.97 12 14 0.0016 0.17 12.7 6.7 2 23 937 959 936 959 0.95 13 14 0.00049 0.05 14.4 0.3 1 23 1004 1026 1004 1026 0.98 14 14 0.00024 0.024 15.4 0.2 1 23 1031 1054 1031 1054 0.95
Sequence Information
- Coding Sequence
- ATGCTAGAAAACAATTGTCGTTTAGACATAGAAAATAGCAGCGTGTTCACAAATGTTCCGGGAAGAAGTAGTTCAGATAATGTGGATTCAGTGAACAGCCACCAGTCGATTATTGTACAAActatatcgataaataattcactgttagacaataataatttcagtaCGGAAGTAACAGAAGACTGTAATGTATACacaaatgtttcaaataacCATAATACTTCTGTTAGTATGGTTGGAATGAATAGTAAAGAATCGACTGGgcaaattattgtacataatacaactgaaaatgatattaatggTTTGAGTATAAAACGGAACAATAGTTTTCCATCCACTAGTCTCCAAGAACGAATGGTTTTGGATGAAGTACATGCTGCGTACAATAATGAATCTGTTTTAGGAATGTTATTACCCCATGGTTcgactaaaaataattgtaatgttattgtaaaaattgaacaaaacgaatgtgatatgaatttttttgcGGAAGGAAATAATTCAGATAATGTAGATGAAAGAGATAGAGAATCAAGTGAACAAGGTGTATCTCATACGTCGGTGATTAATAACAGTCAAACTATAAAGGTGGAAAAAATCATGTTCTCGAATGACGCagaaagaaatatttcaaatcatgCTGTGAACGATAGAGAATCGCCTATTGTACCACCTTTACTGAGTGttgtaaacattaaacaaGAGCCCAAAGACTTAGTTAATAACAGTACAGCTAGCTCAAATTCTCATCATTTACCTGTCAAGGAATTTTCTaacattgaaaatgtaaaaaaatctattgtcAATGAACTtggtaaaattgtattcacgTGTAAAGTCTGTAATAATTCGACTAATGACCGTCATACGTTTGCATTGCATATGAGTTGTCACTCTGAAGGCAACTTCCACGAGTGCATTGTGTGTGATAAAAAGTTTCCTTCTGTATCTCTTTGGCAAAATCATTTGATGTTCCATCGAGAGAAGCAGCATTTAATTTTGATGTCAGGTTGCAATGAAGCCCATTCCAATAAAACTACTGATTTGGAAAGTACAGAACATCGAGTACGTTCTAATACAATTGTGGGAAGTGGAATTAACCAAGTGATTTCTAGAATGAAACACGAGTATAATAGCACCAGTGCAGATGTTGTGACAAGTTCAGATGATGAGGAGACAGAAAAACCAAGAAAACAATTTAGCTGCAGTATTTGTAAAATCATGTTCCCTTCCATGTTATCATTAGTAGTTCATCAAGCTGTTCATAAATCGAGTAAGTTTTCTTGTCGATTTTGTAATAGAACGTTTTCTGCAAAGGGTCCGTGTACAAACCATGAAAAGTCACATAacccaaataaaaatattcggttATTGGTGGACACTAAGAATAACAGTTTTctcaaacagaaaaaaatggaGTACATTGTTCCGGAAAGTAACGACAATGTCCAATTGGTTCAGCGCgtgaataaaaagaaaaaagagaatccattgcgaaaacaattttcttgtagtatttgtaaaaaaaaatttgccaaaCGTTGTTATTTGACAAACCACATGAAGTTGTTACATAAAATAGATCCGTATTGGCTTGAGCAACAGGCTAATTCGAGTAATGTGAATGGTGAAGAAAATGGTACAATAAAAAGTCCTAAAGAACATGAAACGCGTCCATCAGTTGCTGCCGTGCACAGCTTTACTAATGACGCTGTTGTGGACAAATTGTCATATTGCACATTGTGCATGAAACAATTTAAACATATGGGTGCTTTAGCCAGTCATATGCACGTTCATTCGGCCAATAAACAGTATGAGTGTCGGTATTGCAGTAggaaatttaatatgaaagGACCATTAACCATCCATGAGAGAACTCGGAAATGTATAATAGATACGCAACAATCTTCCTATGGTGAAAACTTTTCGACTAATGATGGTTTAATACAAAGAAACAATAATGATGATTCCGAACTTGACGTTGGTGTGcacaatcaaaatataaatgctACAAATCTGGTGAAGAAGGAACGTTTTTGGCTTGTGTGCGATGTGTGTGATAAAAAGTTCTCTATCCCGGACCGATTGATTGTACACAGAAAGTTGTATCATCGTTGTGACACACCGTTTTTGTGTAAGGTCTGCAATAAATCTTATGATTTAAGGTGTCACTGGAATAGGCATTTAAAATGGCACTACTCGAAGAACAAGCAGAAGGGAAAATCTGTTAGCCATCGACAGACCGGTAATGCTGAGCCAAACAAACTTAAATGTGAGTATTGCAAAAAAGAATATGTCTCGATGTCTTACTTTAAGAAACATTTGTCACTGAATAAAGAGTGTCGTcgtcattgtaaaacgaattttgtgGGATGGGACAAATCCAAAAGTAGAATGCAACGCCAATGTAAAATCTGTCACAAAACATACAGCACGGCATATAACCGCAAAGTACACGTAATGACTGTTCATAAACAGTTTGACAACTTGTATTCGGATGATAGTGAAGTGGAAGGTATGAATGATAGTGAAGTTGAAGGTATGGATGATAATGAATTCGAAGATGTGAACTATACTATTGCTGAAGATATGGTTGAAACTGTTCTTGAAGATGGGGATGATGCTACTATTGCTGGAAACGTGAACAATACTGTTGTTGAAAACATGAACAATACTATTTTGAAATATGTGGATATACAAAAAAGTGATAGCTATAAAATGGTATTAAAACCAGTTCAGCAGAAACGAACAGTTGTAAAAAGAAGACGACGTCATCAAATTGcagaagacaaaaaaagatGTCAGTGTAATATATGtggaaataattatagtaacaGAGCCAATTTGAGTAGACACCATAGACATAGTCACAAGTTAGACCAGGACGTTTATCAACAACTCGTGAcagttgaaaacaaaacagtaCCGACGAGTAGTAATAGTAACATTACAGatatttctgtaataaatGTCATATCGATGAACAAagattatataaagaaatactCTTGCGTAATGTGTAAAATGGTATTTTCCGATGACAATGCActacaaaaacataaaatgataCATACTGCAAATCATTATAAGTGCAATGATTGTGGTCAGCAGTTCGAGACTAACATCACATTAGGTGAGCACATTTTGCAGAACCACAATGTCGGTGTGACATTGAACGTGAATAATGATAACAGTCGTTCAATTCTGAATGAGTCGTCATGCCAGTCCAGTGTATGA
- Protein Sequence
- MLENNCRLDIENSSVFTNVPGRSSSDNVDSVNSHQSIIVQTISINNSLLDNNNFSTEVTEDCNVYTNVSNNHNTSVSMVGMNSKESTGQIIVHNTTENDINGLSIKRNNSFPSTSLQERMVLDEVHAAYNNESVLGMLLPHGSTKNNCNVIVKIEQNECDMNFFAEGNNSDNVDERDRESSEQGVSHTSVINNSQTIKVEKIMFSNDAERNISNHAVNDRESPIVPPLLSVVNIKQEPKDLVNNSTASSNSHHLPVKEFSNIENVKKSIVNELGKIVFTCKVCNNSTNDRHTFALHMSCHSEGNFHECIVCDKKFPSVSLWQNHLMFHREKQHLILMSGCNEAHSNKTTDLESTEHRVRSNTIVGSGINQVISRMKHEYNSTSADVVTSSDDEETEKPRKQFSCSICKIMFPSMLSLVVHQAVHKSSKFSCRFCNRTFSAKGPCTNHEKSHNPNKNIRLLVDTKNNSFLKQKKMEYIVPESNDNVQLVQRVNKKKKENPLRKQFSCSICKKKFAKRCYLTNHMKLLHKIDPYWLEQQANSSNVNGEENGTIKSPKEHETRPSVAAVHSFTNDAVVDKLSYCTLCMKQFKHMGALASHMHVHSANKQYECRYCSRKFNMKGPLTIHERTRKCIIDTQQSSYGENFSTNDGLIQRNNNDDSELDVGVHNQNINATNLVKKERFWLVCDVCDKKFSIPDRLIVHRKLYHRCDTPFLCKVCNKSYDLRCHWNRHLKWHYSKNKQKGKSVSHRQTGNAEPNKLKCEYCKKEYVSMSYFKKHLSLNKECRRHCKTNFVGWDKSKSRMQRQCKICHKTYSTAYNRKVHVMTVHKQFDNLYSDDSEVEGMNDSEVEGMDDNEFEDVNYTIAEDMVETVLEDGDDATIAGNVNNTVVENMNNTILKYVDIQKSDSYKMVLKPVQQKRTVVKRRRRHQIAEDKKRCQCNICGNNYSNRANLSRHHRHSHKLDQDVYQQLVTVENKTVPTSSNSNITDISVINVISMNKDYIKKYSCVMCKMVFSDDNALQKHKMIHTANHYKCNDCGQQFETNITLGEHILQNHNVGVTLNVNNDNSRSILNESSCQSSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -