Basic Information

Insect: Chaetogeoica ovagalla
Gene Symbol: -
Assembly: GCA_032441825.1
Location: CM063741.1:5681138-5683346[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00061 0.062 14.1 3.5 3 23 177 197 176 197 0.98

2 10 0.0002 0.02 15.6 4.0 1 23 203 225 203 225 0.96

3 10 2.9e-05 0.003 18.3 4.9 1 23 231 253 231 253 0.99

4 10 7e-06 0.00072 20.2 3.5 1 23 259 281 259 281 0.97

5 10 1.4e-05 0.0014 19.3 1.4 1 23 287 309 287 309 0.97

6 10 0.00023 0.024 15.4 0.1 1 23 315 337 315 337 0.98

7 10 0.071 7.3 7.6 0.1 3 21 344 362 343 363 0.93

8 10 0.00024 0.024 15.4 0.0 3 23 385 405 384 405 0.97

9 10 8.8e-05 0.0091 16.7 2.2 1 21 455 475 455 476 0.93

10 10 2.3e-05 0.0023 18.6 3.5 1 23 487 509 487 509 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00061	0.062	14.1	3.5	3	23	177	197	176	197	0.98
2	10	0.0002	0.02	15.6	4.0	1	23	203	225	203	225	0.96
3	10	2.9e-05	0.003	18.3	4.9	1	23	231	253	231	253	0.99
4	10	7e-06	0.00072	20.2	3.5	1	23	259	281	259	281	0.97
5	10	1.4e-05	0.0014	19.3	1.4	1	23	287	309	287	309	0.97
6	10	0.00023	0.024	15.4	0.1	1	23	315	337	315	337	0.98
7	10	0.071	7.3	7.6	0.1	3	21	344	362	343	363	0.93
8	10	0.00024	0.024	15.4	0.0	3	23	385	405	384	405	0.97
9	10	8.8e-05	0.0091	16.7	2.2	1	21	455	475	455	476	0.93
10	10	2.3e-05	0.0023	18.6	3.5	1	23	487	509	487	509	0.97

Sequence Information

Coding Sequence: ATGTTAAAAAGGTACAATGACAGTCTTCAGCCGATAAGATTGGTGACGGACCATCTGACCGAACGGCTGAATCTCGACAGTGCGTGCGGCGCGTTGCTGCCGTCGATAGATCCTGTCGAACAGAgattgccgccgccgccgctgccacCACCGTCGCTGCCACCACCGTCGTTGCCGCCGACCACCACCAAGTGGACGAAAAAGAGCCGGCCGACCGCTGGACAACATATTCGGCTCGTGGCCAAAAAGACCGAACAGAATgacgtgacgacgacgatgagtAACAATCTCATGTTTCGAAGCATGTTTTTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCTATACAATTGTCTACTACTGACGGGGAGTACTTCACGCGGAAAACCGGCAATCCTAATTTGAACACGCAtcaccagcagcagcagcaacagcagcaagCGGTCGCCGCGCTAGTGAACCACGATTCGAGTTCCAGTGTAGATATCAAACCGTTAcaaGTACCCAAAGCCCGCCCACACGGGTGCGAAGAGTGcggcaaaacgtttttaatgaaacacCATTTGTCTACTCATATGAGAGGTCACACTGGTGAACGACCTCACATCTGTCCGGAATGTGGCAAGACCTTTGCTCTCAAACATTGTTTGAGTACCCATTTGCTTTTGCATAGCGCCGAAAGACCTTACAAATGCTTGGAGTGCAATAAAAGTTTTACTTTAAAACATCATTTGgTAAGTCACGAAAGAGTGCACACTCGAGACAGACCATTCGAGTGTCCCGAATGTCGTCGTAGATTTCCTCAGAAACGTCATTTGACCACTCACATAAAATTCCATTCTGGAGAACGACCGTACTCTTGTTCtGTCTGTGGCGAGACCTTCTCTCGCGAAGAACATCTAGTCATGCATTCGAGATTCCACGGGGGTACACAACCGTACGTGTGCCCGGATTGTGGAGCCGCATTTCTACGTAAATTCGAATTGGTCAACCATGAACGTCAACATGGACGCATACCCGAATCTTGCCCCGCTTGTGGCAAGGAGTTCTTACAAAGACGTACGTTATTGGTTCACGTTAGAAATTGTGGCTTAAACTCGTCGACACCAGTGCACAGATCTCCGTACACCGCGACAGCCAGCAAAGCGTGCCGTGAATGCGGTGAAACATTTGCCAGTGATGAAGGCCTAGCATTGCACATGCGATTGCACATCGGTGATCACAGTTTCCTGTCCGACATCTGTAGTCTGGCCGCCACATTGAAACAAAGCGTACAAGGTGTGTCAAATGGCATTGCCAATGTGCAAAATCACCATCAGTCGCAACATCAGCCGGGTGTTGTCATCAATAAAAAATCTCACTATTGCGGAGATTGCGGTCGTGGCTTCACTCAGAAACATGGTTTGCAACAACATCACATCAAATACCCAAACGCCACGTGCAAGGACAAGCCGTTTTCGTGTCAGAAATGTGGTAAAAGTTTCATGCAAAAGAATCATCTCGTATTACACGAACGACAACACATGGATCCGCCACCGTCCAGAAATCGTAGTGCTACCACCTCGGCTGTCCAATCAATACAACACATACAGACTGAACAAGTTGGCTTACAACCCACACCCCTACATACGACTATTTTGGGACTACAGCCTATTAGGCATATACAATCATCTGTTAGCCAACCTCAACTTCTAAGACATCCAAGCGAGGCCCATTCTGGGTCTTAA
Protein Sequence: MLKRYNDSLQPIRLVTDHLTERLNLDSACGALLPSIDPVEQRLPPPPLPPPSLPPPSLPPTTTKWTKKSRPTAGQHIRLVAKKTEQNDVTTTMSNNLMFRSMFFMNEEARHFLAPPIQLSTTDGEYFTRKTGNPNLNTHHQQQQQQQQAVAALVNHDSSSSVDIKPLQVPKARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLSTHLLLHSAERPYKCLECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQKRHLTTHIKFHSGERPYSCSVCGETFSREEHLVMHSRFHGGTQPYVCPDCGAAFLRKFELVNHERQHGRIPESCPACGKEFLQRRTLLVHVRNCGLNSSTPVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAATLKQSVQGVSNGIANVQNHHQSQHQPGVVINKKSHYCGDCGRGFTQKHGLQQHHIKYPNATCKDKPFSCQKCGKSFMQKNHLVLHERQHMDPPPSRNRSATTSAVQSIQHIQTEQVGLQPTPLHTTILGLQPIRHIQSSVSQPQLLRHPSEAHSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305888;
90% Identity: iTF_01305888;
80% Identity: -