Basic Information

Insect: Chaetogeoica ovagalla
Gene Symbol: -
Assembly: GCA_032441825.1
Location: CM063734.1:1121858-1124325[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.067 6.9 7.7 0.8 1 17 58 74 58 75 0.93

2 14 0.022 2.3 9.2 4.7 1 23 93 115 93 115 0.98

3 14 0.1 11 7.1 2.5 3 20 127 144 126 148 0.88

4 14 1.1e-06 0.00011 22.7 2.6 1 23 153 175 153 175 0.98

5 14 0.00013 0.013 16.2 1.8 1 21 181 201 181 202 0.97

6 14 5.5e-05 0.0057 17.4 0.4 1 23 209 231 209 231 0.98

7 14 4.6e-06 0.00048 20.8 3.1 1 23 252 274 252 274 0.99

8 14 0.036 3.7 8.5 5.8 1 23 280 302 280 302 0.93

9 14 2e-06 0.0002 21.9 4.6 1 23 308 330 308 330 0.99

10 14 0.0023 0.24 12.3 0.6 1 23 336 358 336 358 0.94

11 14 0.00093 0.096 13.5 1.2 1 23 364 387 364 387 0.96

12 14 8.4e-05 0.0086 16.8 2.4 1 23 393 415 393 415 0.97

13 14 0.00077 0.08 13.8 3.6 1 23 421 443 421 443 0.99

14 14 0.0012 0.12 13.2 3.6 1 23 447 470 447 470 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.067	6.9	7.7	0.8	1	17	58	74	58	75	0.93
2	14	0.022	2.3	9.2	4.7	1	23	93	115	93	115	0.98
3	14	0.1	11	7.1	2.5	3	20	127	144	126	148	0.88
4	14	1.1e-06	0.00011	22.7	2.6	1	23	153	175	153	175	0.98
5	14	0.00013	0.013	16.2	1.8	1	21	181	201	181	202	0.97
6	14	5.5e-05	0.0057	17.4	0.4	1	23	209	231	209	231	0.98
7	14	4.6e-06	0.00048	20.8	3.1	1	23	252	274	252	274	0.99
8	14	0.036	3.7	8.5	5.8	1	23	280	302	280	302	0.93
9	14	2e-06	0.0002	21.9	4.6	1	23	308	330	308	330	0.99
10	14	0.0023	0.24	12.3	0.6	1	23	336	358	336	358	0.94
11	14	0.00093	0.096	13.5	1.2	1	23	364	387	364	387	0.96
12	14	8.4e-05	0.0086	16.8	2.4	1	23	393	415	393	415	0.97
13	14	0.00077	0.08	13.8	3.6	1	23	421	443	421	443	0.99
14	14	0.0012	0.12	13.2	3.6	1	23	447	470	447	470	0.97

Sequence Information

Coding Sequence: ATGTCGTCCGCGACGGACGGCTCGTCATCGTCCACgTTGTTCGACGAAGGCGTTGACGGATCTTTGTCGCCTACGACTTGTGAAGAAATGGCGTTGGCCAAGGAAAACATAGAGCTCATATCGGGCGAAGATATCAAAGAGACTTTGGATACGAATATGTTCCATAACATTTTTAAGTGTCTACGTTGCGAACAGACTTTCGAAAACGAAAGCCAGTTACACAAATGCAACCCGTTACctttaaacgttaataaacaaaagaaattaaaacgagTGTTCAAGTGTTCACTGTGTGACAAACACTATCACTTCCCATCGTTAGCCATGCTTCATTTGAAACGTCATCAGAAATACATGAACAGTAAAGTTGTGAATGCGTGCAAAATTTGCAATTCGAAATTTCCATCGGCAAAAACGCTGAAGGACCACTGCAAGCAAGAgcacaatattattcagtACCAGTGTCATATTTGCGACAAATTGTTCAAACAATCCAGGAATTTACAATATCACATCATGGGCCATTCGGGTGACAAACCGTTCCAGTGCGAATTGTGTCTGCACAAATTCACTCGAGCCGATCATTTGGCCAGACACCGGAGAGACAATTGTGATCAAATGGAATTTGAATGCGACTTGTGCGGGAAAATTTACAATACCAAAAGAGgtATCAGGACGCATTTGAAAGTACATTATGACAGTCCGAAACCAGGTACCATATGGGCGTTGTATAAGGAATCTGGAGAGAAATATTACGAGTGTacgttatgtaataaaacatttacacaATTTTCCAGATTCAAAGAACACATACGAATGCATACCGGTGAAAAACCATTTGAGTGTAAGATATGTAATAAAAGGTTTACTTGCCATTATAAACTGAAAATGCACGGTGACGTGCATACGGATGACAGACCATTCAAGTGTAGTTATTGCGAGCTGAGTTTCAAGAATCGCAGGTATCTTAACAAGCACTTGCGCAAACACGACAAGTGTAAGCAATATCGATGTCAGATTTGCGATAAAGAGTTCCAGTGGTACAATGGTCTGAAGTATCACATGGCTTCACATACGGGCGAAAAACCGTATGCATGCGTTAAATGTGGCAAGTTGTATTCCCATTTTAGCGCTCTAATCACTCATGAGCAACGCACTCAtagtgatgaaaaaaaatacgaatgcCATGTTTGCAACAAGAAATTTGCTCAGTTCATCACACTAAAAAATCATGTGGTCAAGCACAGCAATGAAAAGCCGTTCAAGTGTCATCTGTGTCCGGCacagTTTACCATTTGTGCATCGTTGAAATCACATTTGAATACGCACGATAGAGACTATCAGTGCAGTTTTTGTGGCGAAACCTTTTTCCAATTGTCCAGCCTGAGGTGTCATGAACGTAAGGTGCACAATAAAATAGATGACTGTGGAGTTTATGAAGAAAAATACGGTTCGGAAATGCAAGTGAAAGAGCATTTGAAACACGAACACGAAATTCGATTCGCAAAAACAGTCGTTGTATATGACAACGATTTTGTACTTGACGACTGA
Protein Sequence: MSSATDGSSSSTLFDEGVDGSLSPTTCEEMALAKENIELISGEDIKETLDTNMFHNIFKCLRCEQTFENESQLHKCNPLPLNVNKQKKLKRVFKCSLCDKHYHFPSLAMLHLKRHQKYMNSKVVNACKICNSKFPSAKTLKDHCKQEHNIIQYQCHICDKLFKQSRNLQYHIMGHSGDKPFQCELCLHKFTRADHLARHRRDNCDQMEFECDLCGKIYNTKRGIRTHLKVHYDSPKPGTIWALYKESGEKYYECTLCNKTFTQFSRFKEHIRMHTGEKPFECKICNKRFTCHYKLKMHGDVHTDDRPFKCSYCELSFKNRRYLNKHLRKHDKCKQYRCQICDKEFQWYNGLKYHMASHTGEKPYACVKCGKLYSHFSALITHEQRTHSDEKKYECHVCNKKFAQFITLKNHVVKHSNEKPFKCHLCPAQFTICASLKSHLNTHDRDYQCSFCGETFFQLSSLRCHERKVHNKIDDCGVYEEKYGSEMQVKEHLKHEHEIRFAKTVVVYDNDFVLDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -