Cova009852.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- L
- Assembly
- GCA_032441825.1
- Location
- CM063733.1:4774609-4806756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3e-06 0.00031 21.3 1.2 1 23 123 145 123 145 0.98 2 22 1.6 1.7e+02 3.3 7.0 1 23 151 173 151 173 0.97 3 22 6.7e-07 6.9e-05 23.4 5.6 1 23 179 201 179 201 0.99 4 22 8.4e-06 0.00087 19.9 0.9 1 23 207 229 207 230 0.96 5 22 0.00013 0.013 16.2 2.0 1 23 247 269 247 270 0.96 6 22 0.14 14 6.7 0.5 1 23 294 317 294 317 0.97 7 22 0.3 31 5.6 0.5 1 23 355 378 355 378 0.95 8 22 0.004 0.42 11.5 2.1 2 23 574 595 573 595 0.94 9 22 0.0005 0.052 14.4 0.7 1 23 603 626 603 626 0.95 10 22 1.8e-05 0.0018 18.9 0.4 1 23 631 654 631 654 0.94 11 22 0.0019 0.19 12.5 0.5 2 23 704 725 703 725 0.96 12 22 0.078 8.1 7.5 3.6 1 23 729 751 729 752 0.96 13 22 2.2 2.2e+02 2.9 0.3 3 23 799 821 798 821 0.85 14 22 0.0011 0.12 13.2 4.6 2 23 835 856 834 856 0.96 15 22 0.0026 0.27 12.1 0.3 1 23 866 888 866 888 0.98 16 22 0.12 13 6.8 1.8 2 23 896 917 895 917 0.97 17 22 2.1 2.2e+02 3.0 2.4 3 23 998 1021 997 1021 0.81 18 22 0.22 23 6.0 1.5 1 23 1025 1047 1025 1047 0.97 19 22 0.17 18 6.4 0.0 2 23 1059 1080 1058 1080 0.95 20 22 0.0077 0.8 10.6 0.0 1 23 1088 1111 1088 1111 0.96 21 22 0.78 81 4.3 0.1 1 23 1118 1142 1118 1142 0.94 22 22 0.55 56 4.8 3.7 1 20 1169 1188 1169 1192 0.88
Sequence Information
- Coding Sequence
- ATGCGTGGACGTGCGGTAAAATACGTTGGGCCCGGAGTTAGAAGTCCCTCGTCCAAGGGACTTAATAATCTCGTGTTACGTGATGCGATGCCGTATCGTCAAGTGAAAGTGGTTCTTCGTGGTGaagcgCTGAGCGGCACGGGCGAGGTGAGCACCGAAGAGGCGGCTTCGTCGTGGAGCTCGGCCGTGTCGGAGGATCACACGTCGCCGGACAGCTGCGCAACCAGCAACAGCCGACCCGGTTCCACGGTCGATCACCACAACCACCACCATCAACCACATCACCACCGTCGCCGAGGCCCGTCGTCGTACGTCACGGCCGCGGCCGCCGCTGCCGTGGCGGCCAACGTCAACGACGCCAACCCGTACGCGTGCCAGTACTGCGACAAGACGTTTCCGCGGGGCAGCTATCTAAAGAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGTCGGAGACTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTGCACACGGGCGACAAGAAATATAAGTGTACTCAGTGCGATCATGCATTTTCAAGAAGCGATCACTTGAAGATTCACATGAAAACTCACGACAATCAAAAACCGTTCCAGTGCACGGTGTGCAACAGGGGTTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAAAACCATCACAAGAAAGCGACGGAACGGGCCAACTCGCCGCAAATCTCCGGCCCGTCGTACAAGTGCTTGCAGTGCAcgcaaatatttcgaaaacccGACGAGTTACAGaatcaCACTGCGACGCATCATCTCGGAGAACAGTTGTCGTCGAATTCCCGAAGCTCAAAACGTTCGACACCGCCGAAAACGCCGAACCAATACATATGCATGTACTGCACCAAAGAAATGCCAAACATGGACGCTCTCCAACAACATTTCCAGACCAAGCACTCCGCGATCGTGAACGGCAAGCATCCGGATGACTCGTTCCCGGCCGTATCACCGGCGGCCGTGTTCCCGTGGCTCAACTTGGCCGACTCGCCCGCCCTTACGCTGCCACCGTACTCGTGCCGGTTGTGCATGAGCCAATTCCCGTCCGTGACATCGCTGCAAAAACACATCACCACCGCCCATTACTTGCACTCCGTCctgaacaacaacaacaacaacggcgCCAGCGACAACGATAATTGCAAAGTCGGCGCGTTTCCGCTGTTCGGTTGGCCGCCGCCGGCGGTAACGGCCAACGGACACCATCACCGTCGCCGCGATTCCACGTCGGCCGCGGGCGCCGGCGGCTGTTTCTCGCCCGACGAAACCGTCCAGACCGGTCCCACGGATCTAtccgtgtcgtcgtcgtcgtcgtcgtcgaaacaCGGCGGCGGCAAGCACCGTCATTCGTCGACGGGCAAACACAAATCAGCTGACGAACCGCGGAACTACGGGAACGGCAAAAAGTCCCGTTCGTCACCCGGCCGCGAACTGCACACCGCGGCGTCGCAACGCGCGACCGAcccgacgccgccgccgtcgcgtaCCGTTAAACAAGAACGCGGTGGCGCGTACTTTGCCGGAAAGTATTTCTCGCAGCTGCAACCCCCGCAACAAACTGTCGGGCCGTCCGGTGCTAACGTCTTACTCGgttccaacaacaacaacaacaacaacaacaacaatcacatcaacaacaacaacaacaacaacaacaagatCCAACTGCCCTGTCCGCACTGCCATCTGACGTTCGCGCACTTCGAAGACTACCAACAACACGTGATCGGCCATTTCCTGACGGCCGCAGCCGAGTACTCGTGCCGGGAGTGTTCCACTCCGTTCGCCACGTCCGAACACGTCCAGAAACATTTGATGGAAGTTCACGCGGAAAACTTTTACCGGTGCACGGTATGCAAAGAGGTGTTCCCGACCAAATCGGCTTTGAAGGCGCACTTCGGCACGAACCACGGTAGCGAACGCCGCATGTTCCGGTGCAACAACTGCACGGGTGCGTCCAGACCTCTGTTCCAAACTGAAATCGAATTCATCGATCATCTGAGGAACACTCATTATTCCGCGAGATCACCGCCGCCGGCACCAATGAATCTGatgttAAGATGTCTAGTGTGCCACGCCACGTTTAACACACAAGCCGATATGGAACAACATTTAGCTAGTCATTCCAAACAATTTCAATGTCAATTTTGTTCGGAAGCGTTTCATATCGAGTTCTTGTTGGACAGACACATACAAACGCATCACAGTTCTACAATTTTAAGTCATCTTAATCGGAACCATAAGGATAACGCAATAATTAATGCCATGTGCACTTCGCCCACGTACGCGTCCAGGTCGGTGGACGGTAGCGGTAAACATCCGATGGAAAACGGCACGAACGCGTGTGACatatgcgaaaaaaatgattttcgaaacgaattgGACTTGATGGCCCATAAAAAAACGATGCACCAGGTGAAACCAACAAATCTTTCAACAAAaGTTAGTTTGCATTGTGCgtattgtaatgaaaattgCAAATCGAGGACCGAATTGGAAAATCACATGAAGACACATTCGCAACACGGTTCGAACGTCGGAAAGCACAAGTGTAACATTTGTGACGAAATCTATCAGTCTGCAATCAGTTTGGCCGAACATAAACTCACTCACTGTAAGGTGGCGACGAGTACCGTGTGCAGCCATTGCAAAATGATCATCGACAACGAAGATCAGTTCTACAAACATCTACAGAAACACTGCGGCCCGGTGCAGAACGCGAACGGCGGCGGACAAGTGGCGTTTCCCACGTCGTGCATTATATGCAGACAAACGCTTGTCTCGGACATCGAAGTAAAAGTGCACGTTCACTATCACCTCACGCGGCTCAAAGAACCGCCCGCCGTGTGCGGCAACTGCAACAGGTACAAATCGTCGCCGTCTTCACCGTGCGCCGGCTGCAACCCGTCCGTCAGGAACGCCACCGCCGCTTCGGAACGGTGTCCGGACTGTTGCGGTACGACGACGTTCGACACGTTCGGCTCGCTACAACACCATCTGACCACCGTCCACAGAAAACCGTTTCACTGTTTCAAGTGCAAGATCGGTTTCGAGTCACAACAGGAAGCCACGCTCCATCTCGGCACACACCTGGCCACGTTGAACGGTTCCGTGGACGGTATCGAGTGCGGCCTATGCCCGTGCGTGCTGCCCACTGCCAACGGTCTGCAGACGCACTTGATCGAGCACACGTTCGCCGGCTGCAAAGCGTTCACGTGCTACTTGTGCTCGGCGATATTCACCGCGCCCACGGGACTCCAAGCGCACATGACCGTCGACCATTCGGCCGAGACGCCGCCGTACGACTGTCCCAGGCCCGGCTGCTCGGCCAAGTTTTTCTTCACCGCCGAACTCGACCGGCACACGCTGGAACACCAGGGACAGGACGTGCTGGCCAACATGAACTTCTACAAGTACCAAAACAAACTGATGTCCATGTGCGAAAAGATATCGTTCAAGTGTACCGAGTGCTACCAGAACTTTTTCACGCAGGCCGATTTACAGTGTCACGTGTACGACCGTCACCAACAGCAGCGGCAACCGCAGCAGCCGAGAGACCGCGCGCCGGAGTCGGAGTGCAAACAGCAGCACGTAAACGACGTGAAACGGGAAGAGAAAGACGGGTGCGAGACGACGGACGACGCTGCGACGACGAACAACGAGGACGGCCGCGACGGAGCGGAGAAATCGATCGTGAAagtggaaaaacaaaacgagatTAACGTGAAAATGGAACGGCGCGATGAAAAGGACGAGGACGACGAAGACGAGGAACTGATCGACGTGGGCGTAAACCATCGCAATGACGACGACCCGGCAAAGTCAGCGGACGCTCACTGA
- Protein Sequence
- MRGRAVKYVGPGVRSPSSKGLNNLVLRDAMPYRQVKVVLRGEALSGTGEVSTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHHNHHHQPHHHRRRGPSSYVTAAAAAAVAANVNDANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKKATERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEMPNMDALQQHFQTKHSAIVNGKHPDDSFPAVSPAAVFPWLNLADSPALTLPPYSCRLCMSQFPSVTSLQKHITTAHYLHSVLNNNNNNGASDNDNCKVGAFPLFGWPPPAVTANGHHHRRRDSTSAAGAGGCFSPDETVQTGPTDLSVSSSSSSSKHGGGKHRHSSTGKHKSADEPRNYGNGKKSRSSPGRELHTAASQRATDPTPPPSRTVKQERGGAYFAGKYFSQLQPPQQTVGPSGANVLLGSNNNNNNNNNNHINNNNNNNNKIQLPCPHCHLTFAHFEDYQQHVIGHFLTAAAEYSCRECSTPFATSEHVQKHLMEVHAENFYRCTVCKEVFPTKSALKAHFGTNHGSERRMFRCNNCTGASRPLFQTEIEFIDHLRNTHYSARSPPPAPMNLMLRCLVCHATFNTQADMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSTILSHLNRNHKDNAIINAMCTSPTYASRSVDGSGKHPMENGTNACDICEKNDFRNELDLMAHKKTMHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFYKHLQKHCGPVQNANGGGQVAFPTSCIICRQTLVSDIEVKVHVHYHLTRLKEPPAVCGNCNRYKSSPSSPCAGCNPSVRNATAASERCPDCCGTTTFDTFGSLQHHLTTVHRKPFHCFKCKIGFESQQEATLHLGTHLATLNGSVDGIECGLCPCVLPTANGLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSAETPPYDCPRPGCSAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSMCEKISFKCTECYQNFFTQADLQCHVYDRHQQQRQPQQPRDRAPESECKQQHVNDVKREEKDGCETTDDAATTNNEDGRDGAEKSIVKVEKQNEINVKMERRDEKDEDDEDEELIDVGVNHRNDDDPAKSADAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -