Cova004318.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- -
- Assembly
- GCA_032441825.1
- Location
- CM063726.1:6365781-6372081[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.6e-06 0.00068 20.3 3.7 1 23 200 222 200 222 0.98 2 14 0.0015 0.15 12.9 1.3 1 23 228 250 228 250 0.98 3 14 0.0012 0.12 13.2 1.8 1 23 343 365 343 366 0.94 4 14 0.00012 0.013 16.3 0.6 1 23 399 421 399 421 0.98 5 14 0.029 3 8.8 2.3 2 23 439 460 438 460 0.91 6 14 0.0063 0.64 10.9 0.2 2 23 471 493 470 493 0.93 7 14 0.0023 0.24 12.3 4.9 1 23 498 520 498 520 0.98 8 14 0.0082 0.84 10.5 3.8 3 23 527 547 526 547 0.92 9 14 0.015 1.6 9.7 0.0 3 23 554 574 552 574 0.95 10 14 2e-05 0.0021 18.8 0.2 1 23 590 612 590 612 0.98 11 14 9.7e-05 0.01 16.6 0.3 3 23 620 640 618 640 0.97 12 14 1.5e-05 0.0015 19.2 0.1 1 23 646 668 646 669 0.95 13 14 0.00037 0.038 14.8 1.4 1 23 682 704 682 704 0.95 14 14 3.7e-06 0.00038 21.1 0.1 2 23 980 1002 979 1002 0.96
Sequence Information
- Coding Sequence
- ATGGATACTAGATTCACAGAAGAAATTGTCTCCATACATGTTGATTTCGATAATGCAGACAATATGTTATGTCCGGACGATGTCGTTAAAAccgaatatttcaatacggaCGATATTGATACCATATCGTCTGACGGTTGTATAGTACAATCTATTGACTCTTCGTATTTCACTCACTGCGATGAACACAACAACGAGCTCAACAATGTCAATAGAGCGGTCATGGAATCCGTGCCATATGTTGACGGTTTGCAGTACTTGGCTGCAGTATCTTCTGATATACGCCATATCACTGATAATGTCGAGGAAATGAACCAAGAGCATCAAATCAAACAAGAAAACGTTGATTTATTTGACTCTGGTGATGAAGAAGTTCAGCAAATGAGCCAAGAAGAATTTCATGAATATTTTGATGTTCAAGAAGAAGTTGTTGTTCAAGAATGTCCTGAACAAGAGGTGATCACCCAATATTGGGACGTAAATCGTCCTTCTAATATTGACAACATTTCAAGTACAGAAGTTGAATACATGTCATCAGCAACAGATGTTAACATACCAATACCTGAAGGCGAAGATGTGTCTTCCTCTGTTAATCCGTTTCCATGTGATTTTTGTAGTAGaagatttaatcgaaaatcacACCTTATGAATCATATGGTTACCCATCAATCAGAGCGCCCCTATTCTTGTGCATTATGTGCTGTTCGTTATCGGCGTAAATGCGATTTAGCTAATcatatgaaaatacatttaggTCCTGCAGATGATACTTCACATAGTGGTACAGGTAACCACCAAGGTGCATCTGTTTCAAAAGTAATGaacaaattaatgtttttaaatccaGTAAATAGGAAAAGTATTACTCTTGATGACGAATCTCTAGAGAAAGAAGACACATATCATGAAcagaatgtaaaaaataaaaatcgtggaCGTGGGAGAGGCCGGGGTAGAGGAAGAGGTCGCCCAATAAAAGATCGGATAATGACTCTTGGTTGGAACTCTGAACTATACTCAAAACCACATACATGTAACCCGTGTGGGATTTCATTCACACGTGAAAAAGCACTTCTTAATCATGCAAGACTTCATCATATTGATGATGGTGTAAATATCATTACAACTCAAAAAACTAATTCGGATAGTTATGAGCTTACAATAGTGtctagtaataaaaacaatgatgTCAATTATCCGTGTGATTCGTGTGGAGCAATTTTTGacagatttgattttttaaaacgtcatcAAAGgcAGCATATGAAAAAAGAACTTGGAAACATCGAAGAAGAAATATATGAAGAAGCGCATATGTGTATACATTGTGGATTGTTCTTTAAATCTATGTCAGAATTAGAAGTACATACTGAGCAGCATTTGGTTCCTACAAATATTCCAGAAaaaTCAAAATGTTTAGTTTGCGATGAAACATTTGATAGCACAGATGAGTTGTCTGACCACGTGTCTCAAATGCATACATTACCTGAATATTCATGTAAATTTTGTGGAAAACAGTGTAAAGATGATAAAGCTCTCCACAAACATTTAATGATACATGATACATccgataataaatgtataatgtgtgATAAACGATTTCATTCCAGAGCACGACTTAAACgacatatGGTAACTCATCGAGAAAAAGGAGTTATTTGTGACATATGTGGAGAAGAAGTGCCTGATAAACGAGCGCTTGTCAATCACAAAGCAAGTCATGCAAATACTGTTAGTGTTACCCGAAATTCATtaactgaaaaaatatttccttgTACAAGTTGTGGTAAAgtGTTTGGATCTAGGTCATCACaacaaatacatatacgaataCATACGGGAGAGCGGCCATATggttgtaaatattgtaaaaaggcTTTTGCTGATGGGGGCACACTCAGAAAGCATGAACGAATACACACTGGCGAAAAACCGTACGCTTGCCCCGTCTGTCCAAAAGCATTTAATCAAagagTTGTATTACGTGAACATATACGAGCACATCATGCCGGAACTGAGGCGAGAGGAGGTCAAGTCAATTTTTTCGAGTGTAAAGTATGTGGTTATTTGTTCCGTTCATCAGTGGAGCTGTGTACACATTTAGTACAACATAGTGATGAAAATACAGCAAAGTCTAGAGTAGCTCCTgtgGGGCCTCGTAAATATAAACGTCGCAGCAAATTGGGAAATCGAAAAGATACTTGGTGTTTAGTGGAAAAAGTTTATGCAGTTATGTCAGGCCAATCAGATACGGAGAGTTGTGAGGACGAACCAGTACCCTCAGTAGAAGAGAAAACTGTACAATCAATTGCGAATCAGAATGATATATCATATCTTCCTTCTCCACCCAGTCCTGCTCCAATAAACACTCCAGTAAAGTCATACAAACTCGTCAATGGTAAAGTGCTTAATTACGATCAAAAGTATTCTAAGAATGTGGTGTCGCATGGATCAAAATATTCAGTTTCTAAAATAGAGCTGCCGAAAAAGCAGTGTTTTGTGCTTAAGGATGGTGAGTGCACTAGAACATGTCCgactgttatttattatgctaCAAAAACGGATTCAGCTAATGCATCGCCATTAGGAGAAGAGTCCAAAGAAAATGATAATCCAGATGAAGCCGAAGATCAGATATCTGTAGAAGATATGGATTTAACGCATATCAAGATTGAGCCAATTAGCGAACATCCAGAATTTGTTGTGGAGCATAGCTATGacaatatgtgtaatattgaGTATGCTCAAGAGGGAgtggaatattatataccaaatAATGATGTATACGCCACACAAGGAGATATAGTATTGGAAACCGCCAATGACAATTGTATAATTGAGACTGAATTGGTGTTTGATTCAGATTATGTGGAGGAGGTTGGCGCCAATATTGAGTTGAGCACTGAAGAAATGACGCCTGTTTATACGGAAACTATTTCTTGTGACATTTGCGATGAAGTGTTTGAGGATAGGAAAGAACTCATGAGACACATTCAAACTATGCATATTGGATGA
- Protein Sequence
- MDTRFTEEIVSIHVDFDNADNMLCPDDVVKTEYFNTDDIDTISSDGCIVQSIDSSYFTHCDEHNNELNNVNRAVMESVPYVDGLQYLAAVSSDIRHITDNVEEMNQEHQIKQENVDLFDSGDEEVQQMSQEEFHEYFDVQEEVVVQECPEQEVITQYWDVNRPSNIDNISSTEVEYMSSATDVNIPIPEGEDVSSSVNPFPCDFCSRRFNRKSHLMNHMVTHQSERPYSCALCAVRYRRKCDLANHMKIHLGPADDTSHSGTGNHQGASVSKVMNKLMFLNPVNRKSITLDDESLEKEDTYHEQNVKNKNRGRGRGRGRGRGRPIKDRIMTLGWNSELYSKPHTCNPCGISFTREKALLNHARLHHIDDGVNIITTQKTNSDSYELTIVSSNKNNDVNYPCDSCGAIFDRFDFLKRHQRQHMKKELGNIEEEIYEEAHMCIHCGLFFKSMSELEVHTEQHLVPTNIPEKSKCLVCDETFDSTDELSDHVSQMHTLPEYSCKFCGKQCKDDKALHKHLMIHDTSDNKCIMCDKRFHSRARLKRHMVTHREKGVICDICGEEVPDKRALVNHKASHANTVSVTRNSLTEKIFPCTSCGKVFGSRSSQQIHIRIHTGERPYGCKYCKKAFADGGTLRKHERIHTGEKPYACPVCPKAFNQRVVLREHIRAHHAGTEARGGQVNFFECKVCGYLFRSSVELCTHLVQHSDENTAKSRVAPVGPRKYKRRSKLGNRKDTWCLVEKVYAVMSGQSDTESCEDEPVPSVEEKTVQSIANQNDISYLPSPPSPAPINTPVKSYKLVNGKVLNYDQKYSKNVVSHGSKYSVSKIELPKKQCFVLKDGECTRTCPTVIYYATKTDSANASPLGEESKENDNPDEAEDQISVEDMDLTHIKIEPISEHPEFVVEHSYDNMCNIEYAQEGVEYYIPNNDVYATQGDIVLETANDNCIIETELVFDSDYVEEVGANIELSTEEMTPVYTETISCDICDEVFEDRKELMRHIQTMHIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01330773;
- 90% Identity
- -
- 80% Identity
- -