Cova005631.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chaetogeoica ovagalla
Gene Symbol
-
Assembly
GCA_032441825.1
Location
CM063728.1:1491521-1495265[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0071 0.73 10.7 0.1 1 23 328 350 328 350 0.97
2 12 0.00026 0.027 15.2 1.0 1 23 358 380 358 380 0.98
3 12 0.0002 0.02 15.6 1.8 1 23 387 409 387 409 0.97
4 12 9.1e-07 9.3e-05 23.0 1.3 1 23 415 437 415 437 0.98
5 12 0.0042 0.43 11.4 1.3 1 23 444 466 444 466 0.96
6 12 6.2e-06 0.00064 20.4 0.1 1 23 472 494 472 494 0.96
7 12 4.3e-05 0.0044 17.7 0.1 1 23 500 522 500 522 0.97
8 12 6.8e-07 7e-05 23.4 1.2 1 23 528 551 528 551 0.96
9 12 1.7e-06 0.00017 22.2 0.9 1 23 557 580 557 580 0.96
10 12 2.6e-05 0.0027 18.4 1.4 1 23 586 608 586 608 0.98
11 12 8.2e-05 0.0085 16.8 0.4 1 23 614 636 614 636 0.94
12 12 0.0041 0.42 11.5 0.1 1 21 642 662 642 666 0.92

Sequence Information

Coding Sequence
ATGGCTACTGATCTGGAACAAGAAAGATCTACAACGGCAACGTCCAATACGTGTTTGATTTGTGATGGTAGCACGGGAGTATCTGCACGAAATgccatttcaatatttcagcATCGTGTGGCGTCTTCAGATCGTACAGTTGTGAAAGTGATTGATGGTGTTCTTGGTATAACCCTCTCTTGTGAAGACTTGCATTCTGTTGTTGTATGTCGCCGGTGTTTTAAGTCTCTAAACGAAGTGGATGATCTCGAGGATCGATTAGCCGATATTAAATTGGATCTAACTACTCAATATCAACGTACACTCAAaAGTAAATCCGAATGTTTAGATATACATACTATAGAAACTATTGATGTTGCACATGAAGCCGATACACCAAAACCAGTTAAAAAGCGAGGACGTCGTCCCAAGATCAAGGAAGAATCTATTGACATTCCTGTTTCTAATGCGGACGTTCTACAAGGTGAAGTCGATggaaaagatttaaaaaaaaaatgttcttctGTGGAAAATTTGATAGAAATGTTAGAAAACGACGATAAGGACAATGATGAGGGTGTTACCACAAATGATATTGAAGAAATTTGTTCTCAAAAATTGATTCAGCCTGCTGATATCAAACAAGAAGCTGTTCATCCAGAATTAGAAAATATCGATGATGatattgatgatgatgacgacaacgatgatgatgatgatgatgatgacgaatTGGATGATAGTACAGTGCTTGATGAAGACGATTCAGATTATGAAGGAAATGAGGATTCTAAAAATGGTGGTGAATCTAGTAAttccaaaaaaacaaaagtcacTAAAAATtctatgaagaaaaaaactccaGAAATTCTCATACCACAAATGTTGGTTCATCATGATGGAGATATTTACACTTGTCTGTTGTGCagtgtagaaaataaatttactgcAGATGCACGAGGCATTGTTGTTCATGCGAAAAATGTGCACCAAATTAAGTTGTTTATTTGTGATTTATGTGGACAAGAATTCCTTAAAAGACCTGAATTGATGAAGCATTTAGAAATGCATGGAAATAGTGATGAAGGCAACTTTGTTTGTGAAATTTGCAGTAGGGTATTTAATAATGTGCGTATGTTCAGGGTACATAAAAAGATGCATATGCCTCAATCGAAAAATCATACTTGTGAAACATGTGGCCGGCAATTTGCATCTCGTAATACATTGgaagaacataataatacacatactgGTGTGCGACCATATCGTTGTGAAATTTGTGGTAAAGATTTTACATCCAAGTATACATTTAAAGCGCATGAAAAGGTACATACTAATCGTGAACGAAACTTTACTTGTATTAATTGTGGTAAGGCTTTTCTTACCGAACAAAATCTTATTCATCATGAAAGAACACACTCTGgacttaaaaattatgtatgccAAAAATGTGGTAAAGCTTTTGGTACTGCACGCAATTTGGAAGTGCATTATGTTGTGCACACTGGTTACAAACCGTTTATTTGTCGTATGTGTGGCAAAGCATTTGCTAGAAAAGCAGAGATTAGAGATCATGAACGTATTCACACCGGTGAAAAACCATACCAGTGTGAATTTTGTGGAGCAACATTCAGTCAAAGAAGCAACTTGCAATCACATAAACGAGCCACCCATTATGATGATAAGCGTTATAAATGTACAGATTGCGGTAAAGGATTTAAGAGGCGTCGTTTATTAGACTACCATATGAAAGCTGCACACACAGGTGAAAGACCATTCAAATGTGATGTTTGTCAGGCATCATTTATTTATCCAGAACATTTTAAGAAACATGCACGTATTCATACAGGAGAAAAGCCGTATTTGTGTGAAgttTGTGGTAAAGCATTTAACAGTAGAGACAATAGAAACGCTCATCGTTTTGTACACAGTGACAAAAAGCCTTACGAATGTTTGGTGTGTGGTGCAGGATTTATGCGCAAACCTTTACTTTATAACCATATGACCCAAGCTGGTCATTTGAATGATACCATTGTTGTTAATCAACCACGGCTAGCATCCAGTCCAGTAAATATACAAGAAATCCAAGAGGACATTCAAATGCCAACTACGGATTCCGAAATGGAATTGGCCATGGTAGTTGATTCGGATGGAAATCAAACAGCATTGCGTGACATGACTgcagaagaaagaaaaatgtttgccGGAGAATTAAAAGAACACATACTATTGCCGAGCAAACAAGAAGTACTCGGAAACGATTTGAGTTCTGTTGAACAAATACttgttgataataaatatcaaATTCAATACACAACAACTGACCAACACGGTGATGTTCATACTATGTTGAACATGGATCATCATGGCGATGATACAGAGGTGGTAGATGTTGGTCATATGGAAACTGTCACTGTCAGTGTTGGTGGTCAAGAACACCGTCAATTAATAGTCCCTGCTACTCgtcatattacattaaatgaaAGTGATACAGCTGCATTTACAGAACACACAACTATAAATGGTGAAAATGTGCAAATAGTACAGATACAAATACAGGACGATGATGGTGAAGATCAAAAACAttggtttaatattattcaaccaCAACaaggttaa
Protein Sequence
MATDLEQERSTTATSNTCLICDGSTGVSARNAISIFQHRVASSDRTVVKVIDGVLGITLSCEDLHSVVVCRRCFKSLNEVDDLEDRLADIKLDLTTQYQRTLKSKSECLDIHTIETIDVAHEADTPKPVKKRGRRPKIKEESIDIPVSNADVLQGEVDGKDLKKKCSSVENLIEMLENDDKDNDEGVTTNDIEEICSQKLIQPADIKQEAVHPELENIDDDIDDDDDNDDDDDDDDELDDSTVLDEDDSDYEGNEDSKNGGESSNSKKTKVTKNSMKKKTPEILIPQMLVHHDGDIYTCLLCSVENKFTADARGIVVHAKNVHQIKLFICDLCGQEFLKRPELMKHLEMHGNSDEGNFVCEICSRVFNNVRMFRVHKKMHMPQSKNHTCETCGRQFASRNTLEEHNNTHTGVRPYRCEICGKDFTSKYTFKAHEKVHTNRERNFTCINCGKAFLTEQNLIHHERTHSGLKNYVCQKCGKAFGTARNLEVHYVVHTGYKPFICRMCGKAFARKAEIRDHERIHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCTDCGKGFKRRRLLDYHMKAAHTGERPFKCDVCQASFIYPEHFKKHARIHTGEKPYLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYNHMTQAGHLNDTIVVNQPRLASSPVNIQEIQEDIQMPTTDSEMELAMVVDSDGNQTALRDMTAEERKMFAGELKEHILLPSKQEVLGNDLSSVEQILVDNKYQIQYTTTDQHGDVHTMLNMDHHGDDTEVVDVGHMETVTVSVGGQEHRQLIVPATRHITLNESDTAAFTEHTTINGENVQIVQIQIQDDDGEDQKHWFNIIQPQQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01329191;
90% Identity
-
80% Identity
-