Cova006390.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chaetogeoica ovagalla
Gene Symbol
-
Assembly
GCA_032441825.1
Location
CM063728.1:12365475-12369113[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2.6 2.7e+02 2.7 2.6 1 23 41 64 41 64 0.95
2 28 6.7e-07 6.9e-05 23.4 1.5 1 23 93 115 93 115 0.99
3 28 1e-05 0.001 19.7 3.7 1 23 121 143 121 143 0.98
4 28 0.00049 0.05 14.4 3.6 1 23 149 171 149 171 0.99
5 28 4.4e-06 0.00045 20.8 3.2 1 23 177 199 177 199 0.99
6 28 3.2e-06 0.00033 21.3 2.4 1 23 205 227 205 227 0.99
7 28 7e-07 7.2e-05 23.3 1.7 1 23 233 255 233 255 0.98
8 28 1.1e-06 0.00012 22.7 1.3 1 23 261 283 261 283 0.98
9 28 9.9e-07 0.0001 22.9 0.2 1 23 289 311 289 311 0.97
10 28 0.63 65 4.6 6.3 3 23 442 464 440 464 0.82
11 28 5.7e-06 0.00059 20.5 3.7 1 23 470 492 470 492 0.99
12 28 1.7e-06 0.00018 22.1 1.0 1 23 498 520 498 520 0.99
13 28 3.4e-05 0.0035 18.0 5.5 1 23 526 548 526 548 0.98
14 28 0.0013 0.14 13.0 1.3 1 23 554 576 554 576 0.97
15 28 2.2e-05 0.0023 18.6 0.2 1 23 582 604 582 604 0.98
16 28 0.00086 0.089 13.6 2.9 1 23 630 652 630 652 0.96
17 28 2.2e-05 0.0023 18.6 0.5 1 23 658 680 658 680 0.98
18 28 4.3e-05 0.0044 17.7 0.8 1 23 686 708 686 708 0.99
19 28 3.3e-07 3.4e-05 24.4 0.4 1 23 714 736 714 736 0.99
20 28 8.7e-06 0.00089 19.9 1.1 1 23 836 859 836 859 0.98
21 28 4.7e-06 0.00048 20.7 0.7 2 23 896 917 895 917 0.97
22 28 4.8e-05 0.0049 17.6 2.0 1 23 923 945 923 945 0.99
23 28 7.2e-05 0.0074 17.0 1.2 1 23 951 973 951 973 0.98
24 28 0.0037 0.39 11.6 0.4 1 23 979 1002 979 1002 0.97
25 28 0.00017 0.018 15.8 4.1 1 23 1008 1030 1008 1030 0.98
26 28 0.00042 0.043 14.6 1.9 1 23 1036 1058 1036 1059 0.95
27 28 5.2e-06 0.00053 20.6 1.9 1 23 1089 1111 1089 1111 0.99
28 28 4e-05 0.0041 17.8 4.2 1 23 1117 1139 1117 1140 0.93

Sequence Information

Coding Sequence
ATGGCGGAAAACATTGTTGAGACATCGTCGCCGGACGATGAATCGTTTCAAAATCCAAGCGAATCCATGCATTTCGAAATGGTCATCGAAGGCGAAGAAGAAACTATTCCATCAAAGGAATATATCTGCTACAGATGTCGTATTGTATACCACAAGCGTACGCAAATAGTgagacatttaaaattatcacatTGTAAGAGAAAACCTTCGGTTAGTGAAAAAGCAGTTCCTATTATTAAAAGGCTACCGGGTTTATCAACAAAAAATACTAAACTTTATCAATGTGAAATTTGTTCAAAATCGTTTCCGAACAAGAGGAAATTGACTCAGCACGCTCGGACACATAGTGGcgaaaaaccgtattattgtaacatttGTCATAGGGGATTTTCCAATTCTTATAGTTTGAAGAGTCATGGAAAAACGCATTCCGGCGAAAAGCCATATAAATGTGACGTTTGTCAAAAGGCGTTCGCTCAttcgcatattttaataaaccatAAAAGAACCCATTCTGGAGAGAAACCGTTCAAGTGTGAATTTTGCCAAAAGTGTTTCGCTACGTCTGGCACCTTGGTGGCGCACAGACGTACGCACACAGGCGAACAACCGTATAAATGCGATGTGTGCCAAAAGACGTTTTCCCTGTCTAGTAGTTTGAGTTCGCACAAAAGAACGCATACCGGTGATAGACCTCATAAATGTGATTATTGTCCAAAAGCATTCGCGAAGAGTGGCGACTTGGAAAGGCATAAACGGACACACACCGGTGTAAAACCATTTCATTGTGACGTCTGCGATAAGTCTTTTACCCAGTCGTCCGGCTTGATCATACACAAAAGAATTCACACGGGCGAAAGACCGTTTGCGTGTGATATTTGTGAACGTTCGTTTACTAATTCGGCTAGTCTGATAGCGCACAAGCGAACTCATACAGGCGAAACGCCTCATATGCCCATACGTTTTCTGAACGGCCAACATAATGCGTCGAATAGTCATAACGCTGTGGTggtacagaaaaataatatattctcagAGATACCAGTGCCTACGCCGGGTTTATGGGACACCGGTGTTCCGACACCGTCAATTGGAGATTTCAGTTACAGTTGGTCGAATTGGTTTCAAAGCGAAACGGACACCAGCAGCGTTAAAGATTCGCTTCACGGTAATGGCGAGCGACCGGTGGTGCCATGTGTGCTGCAGTATGATGGTAACGAGAGAGAAAACGCCAATGACGTGAACACATCAAACGGAGTGAGTACGGTTTCAGTCAATAACGTACCACCACCCGTCAAAAGACCCGAAGGTCGCTGGTTGGATTGTGACGTATGCCACAAGACATTTCCTTATTCGTCAAGAcacaaattaattgaacacCAACGAACTCACACCCgcgaaaaaccgtttaaatgtcatttgtgtcaaaaatcattttctttatCTAGTACTTTGATTGTACACAGAAGGATGCACACCGGAGAAAGACCGTTCAAATGCGACGTGTGCTCAAAGGCGTTTGCTCAAAAATCCAAGTTAAACATACACAAAAGAATTCACACTGGTGTGAAGCCGTTTCACTGTAATTTATGTCAAAAGACATTCGCTCATTCTTCAAATCTTGCCGACCATAAGAAAACGCACACACAAGAGAGGTCATACAAATGTGATATTTGCTTCAAATTGTTTACATTAGCCAACAGTTTAcggaaacataaaatattgcaCACCGGCTATAAACCGTACGTTTGTGAAATTTGTCAAAAGGCGTTTGCCAAGAAAGCTAGTTTGGATCGCCACAGGGGTACACATGACGGTGTGCCACAATGGACAAAACCATATGTACACATTGCAAAAGGCAAACGAACCATTAATGCCGATAAGCCGTTTAAATgtcatatttgttttaaatcatttgCCAGTTTGAACGGTATGACTAGACATTCAGCCAAACACAGTGGACAGGATCAGTTCCAGTGTGAAGTGTGTGACAAGACTTTCACAGGTTTGTCGGTACTGGATAGACACAAACGGATACACACCGGAGAAAAACCATTCCAGTGTAACTATTGTCCAAAGGCTTTTGCTTATTCGTCGATACTTGTGACTCATAAACGTACGCATACTGGAGAGAAACCCTATCAGTGTGATGTTTGTCCAAAAGCATACACGCAATCGTCTAGTTTGATAGTTCATAAGCGAACCCATTGGAACCAACAGCAAATCGTCGAGACGACTAAACAGCGACCGGTTTGTCATATGCCGCTAGTCGAACAACCGAAAGCAGTTCAATATGAATTGCCGAGTGCATCGATAACGGTGGATTATACAGACAATTGGTCGGGTTGGTATCCTACTGAACCCAATATGTCTCTTGTCACAAATGAACTACCACAAATCATACAAGATCCAGTTGAAGAGTCGTCCATACGGACTGCAGTGAACCCATTACCTGTACAAGTTTCTGATGACAAGAACGTTAAAATGACACTGCCGCAACAGAAGTTCAAGTGTGCAAAATGCAAAGAAACTTTTGACGAAAGCTCACAGTTATTGAAACACATTAGAAAAGTGCATAGGCCTCCCAGcgcaattaataaatgtaataagacTGCGGAAGAAATGTCTGCATTAAAAACAGCTGCTacgaaacacaaaaaaaaacgtggcgAACGGCAACATTTAGAATGCGACATTTGTCAAAGACCGTTTAacgattcgtataaattaaaagtccACAGACGGACTCACACCAGAGAAAAACCATTCAAATGTGATGTCTGTGAGAAATTGTTCATTGATTCGTGTAATCTCAAAGAACACCAGAAGGTACATACGGGAGAGAAACTCTTTGAATGTGATATTTGCCAAAAAACCTTTTTGCAACTGGGTACATTGACCACGCACAGGCGTACACATACCGGTGAGAAACCGTATAACTGTGATGTCTGTCAAATGCCGTTTGCGTTGTTGAGTAGCATGAAGACGCACAAACGGCGAGCACACACTGGCGAAAAGCCTCATAAATGCGATTTTTGTCAGAAGGCGTTTGTCAAGCGTAACGATATGATCCGTCACCGAAGAACACACACTGGAGAGCGCCCATTCGTATGCGACGTATGTCAACAATCTTTCACACAGTCGTATGTATTGGTCCTGCATAAGAGAAATCATCATTCAAGTGATAAGACTTTTACGAGTGGTACTCACCTGGGTACTGTTCATGCACCGCCAAAACGCAGCACTGTGCCTaaagaaaaaccgtttaaatgtGATGTTTGCCTTAAGTCGTTTGCCAGTCAGTCGACACTGAGCACACATAAACGTACACATACGGGCGAAAAACCATTCCACTGTCACATATGCCAGAAGTCTTTTACCCAGTCTTCAGGTCTCATTGCCCACAAAGCTGCTCACCATCACCGTCCCACAGAGAAATCGTTCGAACAAAACATCCCGCAGCAATTCATCAATTCGACAGAAGTTTTGTATGCACATAAAAGACAACAGTACATTGGCAACAGACCATGTGAATGTGGTATATGTCAGACGTGTTTTAGTTATCAACCGTCCTCTATGAACATACACTTTAATCATCATCAGTCCACGATGCCTGACAGGAacatgtattatgtataa
Protein Sequence
MAENIVETSSPDDESFQNPSESMHFEMVIEGEEETIPSKEYICYRCRIVYHKRTQIVRHLKLSHCKRKPSVSEKAVPIIKRLPGLSTKNTKLYQCEICSKSFPNKRKLTQHARTHSGEKPYYCNICHRGFSNSYSLKSHGKTHSGEKPYKCDVCQKAFAHSHILINHKRTHSGEKPFKCEFCQKCFATSGTLVAHRRTHTGEQPYKCDVCQKTFSLSSSLSSHKRTHTGDRPHKCDYCPKAFAKSGDLERHKRTHTGVKPFHCDVCDKSFTQSSGLIIHKRIHTGERPFACDICERSFTNSASLIAHKRTHTGETPHMPIRFLNGQHNASNSHNAVVVQKNNIFSEIPVPTPGLWDTGVPTPSIGDFSYSWSNWFQSETDTSSVKDSLHGNGERPVVPCVLQYDGNERENANDVNTSNGVSTVSVNNVPPPVKRPEGRWLDCDVCHKTFPYSSRHKLIEHQRTHTREKPFKCHLCQKSFSLSSTLIVHRRMHTGERPFKCDVCSKAFAQKSKLNIHKRIHTGVKPFHCNLCQKTFAHSSNLADHKKTHTQERSYKCDICFKLFTLANSLRKHKILHTGYKPYVCEICQKAFAKKASLDRHRGTHDGVPQWTKPYVHIAKGKRTINADKPFKCHICFKSFASLNGMTRHSAKHSGQDQFQCEVCDKTFTGLSVLDRHKRIHTGEKPFQCNYCPKAFAYSSILVTHKRTHTGEKPYQCDVCPKAYTQSSSLIVHKRTHWNQQQIVETTKQRPVCHMPLVEQPKAVQYELPSASITVDYTDNWSGWYPTEPNMSLVTNELPQIIQDPVEESSIRTAVNPLPVQVSDDKNVKMTLPQQKFKCAKCKETFDESSQLLKHIRKVHRPPSAINKCNKTAEEMSALKTAATKHKKKRGERQHLECDICQRPFNDSYKLKVHRRTHTREKPFKCDVCEKLFIDSCNLKEHQKVHTGEKLFECDICQKTFLQLGTLTTHRRTHTGEKPYNCDVCQMPFALLSSMKTHKRRAHTGEKPHKCDFCQKAFVKRNDMIRHRRTHTGERPFVCDVCQQSFTQSYVLVLHKRNHHSSDKTFTSGTHLGTVHAPPKRSTVPKEKPFKCDVCLKSFASQSTLSTHKRTHTGEKPFHCHICQKSFTQSSGLIAHKAAHHHRPTEKSFEQNIPQQFINSTEVLYAHKRQQYIGNRPCECGICQTCFSYQPSSMNIHFNHHQSTMPDRNMYYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-