Cova001196.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- -
- Assembly
- GCA_032441825.1
- Location
- CM063723.1:14603021-14603455[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-11 8.4e-08 32.1 0.0 4 43 11 50 11 52 0.89 2 2 0.44 6.6e+02 0.5 0.0 17 23 132 138 125 140 0.86
Sequence Information
- Coding Sequence
- atggcgaataaatttaaatattctactGTAGATATGGAATCTGCCTTAAAAGATGTTAATGACAAagtattatcaataaataaagctgctattaaatacaaaataccaAAATCCACTTTATCCATGAAGTTATCTGGAAAATCTCCATTAAATAGGAAAATGGGCCCTAACTCATTCCTTAACATTGaagaagaaatgaaaataaaaacgtggatattaaataatgcaaAACTTGGCTTCCCTTTAAGAGGTGATGATGTAAAGAATTCTGTTCAGAAAGTAATAAAAGAATGTCCTCGACATTCACCTTTTAGAGATTCAAGACCCGGTGAAAAGTggatgaaattgtttttaaaaaggaaTCCTGAAATTGTCAAAAAGAATACAGAAGTAATTTCAATATCACAAGCTGctgtttcagaaaaaaaaaattag
- Protein Sequence
- MANKFKYSTVDMESALKDVNDKVLSINKAAIKYKIPKSTLSMKLSGKSPLNRKMGPNSFLNIEEEMKIKTWILNNAKLGFPLRGDDVKNSVQKVIKECPRHSPFRDSRPGEKWMKLFLKRNPEIVKKNTEVISISQAAVSEKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -