Cova005777.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- retn
- Assembly
- GCA_032441825.1
- Location
- CM063728.1:3946719-3982656[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-17 3.1e-14 53.5 0.0 27 89 2 62 1 62 0.94
Sequence Information
- Coding Sequence
- ATGGCCAAACGCGTATTGGATCTGTACACTCTTTACAAACTGGTTGTACAGAGAGGCGGAATCGTCGCGGTCATTACCAAAAAACTGTGGCAGGAGATTATCCGAGGCCTTGGTCTACCGCCTTCCATAACAAGCGCCGCGTTTACGTTGCGCACGCAATACGTGAAATACTTGTACGCTTACGAGTCGAGAATGAACCAGTTCAGCACGTTGGACGAGCTGAACATGGCGATAGCCGGTAACCGACGCGAGGGTCGGCGCAACAAATCGCTGATGTACTCGGAcatgccgccgccgccgccaccgccgccgccgccgccgtcgtcgtcgtcgtcgtcgtcgtcgtccggaCACCCGCACCACCATCACCAGCAACACGGGCACGGACACTCGCACTCGATCGTGCCGACGGCCGGCGGAGGAGGCGGTCAGACGCCACAAcagccgccaccgccgccgccgccggtccCGCCGTCGCACCACCATCATCACTACGCCAACGTGCTGGCCGCCGAGGACAGGTTCCGGCACTTGGCGGCCGCGATCATCGACAATCACAATCACGCGGctgcggccgccgccgccgccgcagccgccgcTGCAGCAACCGCGGCCGGTGTTGGCGTCGACCACATCGGTGGCGGCAACAGGATTCGGCGACAGTCGTGCAGTCCgccacaacaacaacaacaacaccacCACCAGCAACAGGTCGAATGCGGCGGCAAGACTTCCGCCGCGGTGGCCGCGCTACTTCCGACTCCCCGATCCCCGGCCACCGGTTTACCGCCAACGCCGGCCGTGCAACCGCCCTCGTCGCTGTTCAACGGCCACCAACCGTCCTCGTACCAACAACACCCGCACCACCACACCAACTCCGTACAATCCGTCAACGAACAGACCAACAAACAGAGAGAGCTTTTCAGCATGCTGATGTGGATGGACATCGTCAGAGCAAACCAAAATGCGTTGCCGAGAATGCCAATTCCTAACTTGCCGACGAccgcgtcggcggcggcggcggcggcggcgtacaCGGCGGCGGCCGCGCTGAACTTGACGCCAGCGTACAAGGGACCGATTGTAGCGTCGTCGGCTTCGGTGCCGGAACAGAGCGAAGCATTGAACTTGGGGAAAAAGAGGACgtcgaacaacaacaacagcgacGAGGACGACGAGGACGGGAACGCGGACGAGGACGAGGCGGTGTCGACACCGCCGCCATTCGCGTCCGCGGCGAAGCGCATCAAAACGGAACGGTCTTCGCCGCAGCCGGCCAGCTGTTCCAGCGACGACGAAATGTCTACGGCACAGGCTGTGTTCGGCGACGGGTCTTCGCGACCGTTGACGGCGGCCAACACGGTGCGGTACAGGCCCGACTCGAGACGATGCTCGCCGTCGTCGATTGACGAGGACGTGGTCGAAATGGATATCAACACGTTGCAGTCAACAGGTGCGTCTAGCAACAACTTGTCCATTTACGTGACGCGTAGAACGAAAAACGGAGTATACCGAGGTCAACTCACCAAAAATAACTCGCAAATCAACGGAGGACTCAATAACAACGCAAATTCATTCGTTTTGCACCTGAACGGCGATCTCTACACCGGACACTTGCAACTTCAACAACAGCAGGCGACCAAAAACtaa
- Protein Sequence
- MAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPPPPPPPPSSSSSSSSSGHPHHHHQQHGHGHSHSIVPTAGGGGGQTPQQPPPPPPPVPPSHHHHHYANVLAAEDRFRHLAAAIIDNHNHAAAAAAAAAAAAAATAAGVGVDHIGGGNRIRRQSCSPPQQQQQHHHQQQVECGGKTSAAVAALLPTPRSPATGLPPTPAVQPPSSLFNGHQPSSYQQHPHHHTNSVQSVNEQTNKQRELFSMLMWMDIVRANQNALPRMPIPNLPTTASAAAAAAAYTAAAALNLTPAYKGPIVASSASVPEQSEALNLGKKRTSNNNNSDEDDEDGNADEDEAVSTPPPFASAAKRIKTERSSPQPASCSSDDEMSTAQAVFGDGSSRPLTAANTVRYRPDSRRCSPSSIDEDVVEMDINTLQSTGASSNNLSIYVTRRTKNGVYRGQLTKNNSQINGGLNNNANSFVLHLNGDLYTGHLQLQQQQATKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -