Caur026124.1
Basic Information
- Insect
- Cetonia aurata
- Gene Symbol
- -
- Assembly
- GCA_949128085.1
- Location
- OX421885.1:42732942-42734329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.4 1.5e+03 1.5 0.2 2 17 45 60 44 61 0.85 2 10 5.9e-06 0.0011 20.9 0.4 1 23 162 184 162 184 0.98 3 10 0.83 1.5e+02 4.7 5.2 1 23 190 212 190 212 0.94 4 10 2.8e-05 0.0051 18.8 0.8 1 23 219 241 219 241 0.98 5 10 8.2e-05 0.015 17.3 0.6 1 23 267 289 267 289 0.98 6 10 4e-05 0.0073 18.3 1.9 2 23 294 316 293 316 0.94 7 10 8.4e-06 0.0015 20.4 1.2 1 23 319 341 319 341 0.98 8 10 3.5e-05 0.0064 18.5 0.5 1 23 349 373 349 373 0.95 9 10 1.3e-05 0.0023 19.8 0.4 1 23 379 401 379 401 0.98 10 10 1.5e-06 0.00028 22.7 3.7 1 23 407 429 407 429 0.98
Sequence Information
- Coding Sequence
- ATGACTGAAGTATGCAGATTGTGTCTAAACGATACGGCAAAATCTGAAACACCTAACGATTGCACTACACTCGAAACACTAATAAAGTTACTACTACCAGAAATCGATTTACGTGTTACACCCACATTTGTTGTGTGCAGTCATTGTCTGTACTCATTGAATTCAGCTTATACGTTTAAAAATGAGTGCTTGCGTGTTGAACAACTCATAAATGACTATCGAAAAGAAAATGCACAATTCATCAATTTACAAGAAGTAAAAAATCATCACTTATCAGATAATTGTAAAGAATTTATATCGGTGAGTGAAGTTAAAATTGAGACGGTGTTAGATGACTGTGTTGAAAATGATGACGATGTGAAAAATGTAGACGTTTTAACGGTAGATCCATTTCAACACTTAAATGACAGTTATGAAATTAAGAACGAGTATAAGATAGCAGATAAAAATGATAATGAGGAAATTTGTAGCGATTCACAATCCTTTATTTGTGGAATTTGTAGCCAATCGTTTCAGCAATCATCAGCTCTAGAAACACATTTAAAAACACATGCTAAGCAACCTGAATATGCTTGTGGGATTTGCTGTAAAGTGTTCAAACAGGAATGTCAATTCACAGAGCATAGTTTTTCACATACGGATAAAGAGAGGTATTACAAATGCAAAGTGTGCAATAAAGGCTATAAACAAAGAATTGCATTGCGCCTGCATGAAAAGATACACAAACGCACGATAGGTAAAAGGTCTCTTGCCAGTGCACATTTAAAAGATCACCAAGTGAAAATTCATTTTGGAAGACATGAATGCGAAACTTGCGGTAGGAAATTCGGTGCGAAAAATGCTTTGGCGCAACATGTGCGGACACACACCAGATCTAACAAGTGTAAGATTTGTGGAAGAAACTTCGCTCATAGATCATCTCTCAACTACCATAACAATATTGAGCACAAACCGTATATTTGTGAGGTATGTGAGAAGGGATTCGTACAGGAGAGCCATTTAAAAGATCATAAAAAGTCGCACCTCAACGAGGAGGACAGGGAATTTTTCTGTTCCGTAGATGATTGTAACAGAGTCTTTGCCACCGCTAGGTCTTTACGTCAACATCTTCTTCGACACACTCTCCCGAGGGATTTTGAGTGCCTGTATTGTAAAAAGCGATTCATAGATGCCACCGCTGTGGCGAGGCATATAAAAACTCATGGCAAAGAAAAGCATTTTGAGTGCGGCACTTGTCAGAAAACGTTTAAGCGAAAATATAGTTTAGAAAGGCATTTCCAAACGCATCGAAAGTCGTTAGATTCTCTACATTGTAAAGTTAGCTTTTAA
- Protein Sequence
- MTEVCRLCLNDTAKSETPNDCTTLETLIKLLLPEIDLRVTPTFVVCSHCLYSLNSAYTFKNECLRVEQLINDYRKENAQFINLQEVKNHHLSDNCKEFISVSEVKIETVLDDCVENDDDVKNVDVLTVDPFQHLNDSYEIKNEYKIADKNDNEEICSDSQSFICGICSQSFQQSSALETHLKTHAKQPEYACGICCKVFKQECQFTEHSFSHTDKERYYKCKVCNKGYKQRIALRLHEKIHKRTIGKRSLASAHLKDHQVKIHFGRHECETCGRKFGAKNALAQHVRTHTRSNKCKICGRNFAHRSSLNYHNNIEHKPYICEVCEKGFVQESHLKDHKKSHLNEEDREFFCSVDDCNRVFATARSLRQHLLRHTLPRDFECLYCKKRFIDATAVARHIKTHGKEKHFECGTCQKTFKRKYSLERHFQTHRKSLDSLHCKVSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -