Caur016610.1
Basic Information
- Insect
- Cetonia aurata
- Gene Symbol
- -
- Assembly
- GCA_949128085.1
- Location
- OX421884.1:9268880-9275011[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.024 4.4 9.5 0.3 1 21 74 94 74 95 0.95 2 16 0.00028 0.051 15.6 5.4 1 23 101 123 101 123 0.97 3 16 6.5e-05 0.012 17.6 0.6 2 23 130 151 129 151 0.96 4 16 0.065 12 8.2 1.7 2 20 158 176 157 178 0.92 5 16 0.00046 0.084 14.9 0.1 1 23 185 207 185 207 0.98 6 16 5.1e-06 0.00094 21.1 2.1 1 23 397 419 397 419 0.97 7 16 0.00017 0.031 16.3 5.6 1 23 448 470 448 470 0.97 8 16 0.03 5.6 9.2 0.1 1 23 476 498 476 498 0.98 9 16 1.7 3.2e+02 3.7 0.9 1 20 504 523 504 525 0.89 10 16 0.0013 0.24 13.5 0.1 1 23 532 554 532 554 0.95 11 16 0.00044 0.081 15.0 6.6 1 21 694 714 694 716 0.95 12 16 2.4e-05 0.0043 19.0 5.9 1 23 723 745 723 745 0.96 13 16 0.076 14 7.9 1.9 1 23 751 773 751 773 0.94 14 16 1.2e-05 0.0023 19.9 0.7 1 23 779 801 779 801 0.96 15 16 1.9e-06 0.00034 22.5 1.4 1 23 807 829 807 829 0.99 16 16 0.00024 0.044 15.8 2.6 1 23 834 857 834 857 0.97
Sequence Information
- Coding Sequence
- ATGGATGGCAAGAAGGCGAATGTGAGCGATGATACCCTTTTGGCCGATTTGGAGTATTTAGCAAAACTCTTAGATGACAATAATTCAGAGCAAGAGCAGGAGCAGGTTGATGAGGCCAAGGATAAGAATGAATCTGAAAAGAGTAATGATAAAATTCCTACAAATGAAGTTGTTGGAAAGGTTATGAACCCTGTGCagGTATCTGATAATAATAGGATTTATGAGTGTAGAACTTGCTACAAAGATTTCTTTACCTTAGAAGGGTTAAAGATCCATGAAAGAATTTACTGCGATAACACTTTCAGTTGCAAACAATGTGATAAAACCTATACAACATCACAGCAACTCCACACACACAAATTATCTCACTTGGGGATTAAAGCCTGGGTGTGTAAGATATGTAATAAGACGCTAAcgaaattagaaaatttaaagagtCACTTAATAAGACACCTTAAAAAGACACTTTTGAATTGCTCAAAATGCGGTAGAAGATTTAATTGTGCTCGGCATCTCGAAGAGCACATTACACTATGTAAAGGACAGAAGGTTTATATTTGTGATATTTGTAACGAAGCTTTCAATCAAGATGACAGCATGGAGGTGCACAGAAAGATACATCAGCATAAGTTTCCTGTGTTGCCCACATTGGAAAATCTAGATAATATCAACATCTTTGAATATTATATGGAAATGGATTGTGATGAAAAAACTATGTTTACTAATGAATCagaggaagaagaagaggaagattTTGATGTTACAGAAGAGACTATGGAGCTGGATGTTAAAATCCTAGAAAATCCTGGTCAAGCGATAGCTCAATTAAATAAGGAGATTCCTGTTGAGGAAGATACATCTGATGTGTTGATGAAAAGTGAGAAACAGATTCATAGAGCACGCGGAAATACTAATATTGAGGCTGATGATTCTACTAACAGCACAGATTCTGAGTGTTTACCTAAGATACATTCTTCACTGAAAATAAAGCGGGGTAATGGAAGACAAGATAAGCGTCGCACAACCCAGAAACCCAACGAAAGACCTAGAAAGCGTCCCTCACTTAAGGACAGGATTAAAACAAACCCCGAACCAAATTCCCTAGAAAGTCTAGAACGCAATGCAACGTTTAAGACTCTCAATACGTCGGAATGGCATGCCAATCAGCAACACGACGTATTGAAATTCTACGAATGCGAAACATGCAATAAGAAATTCAGCAGATTATTCAACCTTGAACGGCATAAATCAGTGCATTTGAAAAAAGCATTCGTAAGCTCCCAAGATTGCTCTACCACAGAAGGGTTAAAGCCCCATGAAAGAATAGACTCTGAGAAGATTTTCAATTGCAAACAATGTGATACATCCTATACAAGTCCACACCATCTCTTTAGACATGAATTAACACACATTAAGCCTAAATTCTACATGTGCAAGATATGTGATACGCCGATAATAAAATTGGATCGTTTAAGGGACCACTTAATAAAACACCTTAAAGAGAAACCTTTCATTTGCTTAAAATGCGGAAGAGGATATAATTGTGTTAAGACTCTCAGGAAGCACGTGGCACGGTGTGAAGGAGAGAAGGTTTATATTTGTGATATCTGCAATAAAGCTTTCAATCGACAAGACATCATGGAGGTGCACAGAGAGGTGCATCAGAATAAGTTTCTTGTGTTACCCACATTGGAAAATCTAGATAATGTCTTGGAATATTATACGGGGATTGATTACGATCAAAAATCTATGTTTACCGAAGGATTGGAGAGGGAGGAAGATTTTACTGTTGCAGAAGAGAATTTGGAATCGGATGTTGAACTTTTGGAAAATCAGGATCAAGTGAAAATGGTCGAGATAGCTCAGATAACTAATGAGATTCATATGAAGGAGGAACCATCCGTGATGTTACTGGAAAAAGCGAAAAGTGCAGAAGAGATTAACGGGAAATGCAAAAATATGGATATTGTGGCTGAtaacgccaacgattttgattCTCAGAATAACGTAGTCTTTGAGTATGTGAGTGTACCGATGAAGCAACTTTCACCTGTGAAAAGGCATTTGCTACAGAAAAGACATCGGTGCGAGACATGCGAGAAGGCATACATTAGCAAGTCGCATTTAACCAGACATATGAAATGCCACGAGAATAGCTCAAAGAACTTTTTGTGTTCCAAGTGTGGAAAGGGGTTTAGACAGAATTGTCATTTAGTTAGTCACATGAGGAGGCATCAAAGAGAGAAACCGTTTAAATGTAAATTCTGTGGGAAGGGCTTTCTTGGAGTAACAGAGATGATGGTGCATCAGAGGCATCACACGGGGGAGATGTCCCATTTTTGCAACATTTGTGAAAAAGGATTTGCGGCAGCATACAGTTTGACAGTTCATATGAGGACACATACAGGAGAGAAACCGTACCGTTGCTCATACTGTGATGCTGCTTATACTCAGAATAGTCACTTGGAAGTTCATGTTCGAAGGCACACGGGAGAGAGTTTCGAATGTGATATGTGCCCACGAAAATATACGGTAAAAACTTCATTAAACCATCACAAACGAGTAAATCATGgtGTAAACATTGTCGTTAAAAAAAGGCGAGTGAAAAAAGTGCACAAAATCATTTCCGATGCTGTGACGGTTGATTTCGTAGAAAtcaacaataaaatagaaactgaagaaactaaaataaaaccTGTACAAGATTTGAGATTAACTGGAGATATACGATATACGTCAGAAACTATCGATGTTAAACAGGAAAATTGGGAAACAGGAGTATTGTCAATCGACCTTAGATGA
- Protein Sequence
- MDGKKANVSDDTLLADLEYLAKLLDDNNSEQEQEQVDEAKDKNESEKSNDKIPTNEVVGKVMNPVQVSDNNRIYECRTCYKDFFTLEGLKIHERIYCDNTFSCKQCDKTYTTSQQLHTHKLSHLGIKAWVCKICNKTLTKLENLKSHLIRHLKKTLLNCSKCGRRFNCARHLEEHITLCKGQKVYICDICNEAFNQDDSMEVHRKIHQHKFPVLPTLENLDNINIFEYYMEMDCDEKTMFTNESEEEEEEDFDVTEETMELDVKILENPGQAIAQLNKEIPVEEDTSDVLMKSEKQIHRARGNTNIEADDSTNSTDSECLPKIHSSLKIKRGNGRQDKRRTTQKPNERPRKRPSLKDRIKTNPEPNSLESLERNATFKTLNTSEWHANQQHDVLKFYECETCNKKFSRLFNLERHKSVHLKKAFVSSQDCSTTEGLKPHERIDSEKIFNCKQCDTSYTSPHHLFRHELTHIKPKFYMCKICDTPIIKLDRLRDHLIKHLKEKPFICLKCGRGYNCVKTLRKHVARCEGEKVYICDICNKAFNRQDIMEVHREVHQNKFLVLPTLENLDNVLEYYTGIDYDQKSMFTEGLEREEDFTVAEENLESDVELLENQDQVKMVEIAQITNEIHMKEEPSVMLLEKAKSAEEINGKCKNMDIVADNANDFDSQNNVVFEYVSVPMKQLSPVKRHLLQKRHRCETCEKAYISKSHLTRHMKCHENSSKNFLCSKCGKGFRQNCHLVSHMRRHQREKPFKCKFCGKGFLGVTEMMVHQRHHTGEMSHFCNICEKGFAAAYSLTVHMRTHTGEKPYRCSYCDAAYTQNSHLEVHVRRHTGESFECDMCPRKYTVKTSLNHHKRVNHGVNIVVKKRRVKKVHKIISDAVTVDFVEINNKIETEETKIKPVQDLRLTGDIRYTSETIDVKQENWETGVLSIDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -