Caur001740.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cetonia aurata
Gene Symbol
-
Assembly
GCA_949128085.1
Location
OX421882.1:4573871-4578312[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0026 0.47 12.6 4.3 1 23 33 55 33 56 0.95
2 21 0.00051 0.093 14.8 3.7 1 23 89 112 89 112 0.96
3 21 0.00064 0.12 14.5 2.7 2 23 119 140 118 140 0.97
4 21 0.032 5.9 9.1 0.8 1 23 146 169 146 169 0.97
5 21 8.6e-06 0.0016 20.4 1.1 1 23 174 196 174 196 0.98
6 21 8.7e-06 0.0016 20.4 2.3 1 23 205 227 205 227 0.98
7 21 1.6e-06 0.0003 22.6 0.6 2 23 235 256 235 256 0.97
8 21 9.3e-05 0.017 17.1 1.8 3 23 264 284 262 284 0.97
9 21 9.2e-08 1.7e-05 26.6 3.4 1 23 290 312 290 312 0.98
10 21 0.00024 0.043 15.9 3.0 1 23 318 340 318 340 0.99
11 21 0.069 13 8.1 1.6 3 23 354 375 352 375 0.92
12 21 8e-05 0.015 17.3 0.3 1 23 380 403 380 403 0.96
13 21 1.2e-06 0.00021 23.1 2.0 1 23 408 431 408 431 0.97
14 21 0.00066 0.12 14.4 0.6 1 23 436 458 436 458 0.97
15 21 0.093 17 7.7 1.6 1 23 464 487 464 487 0.97
16 21 4.8e-07 8.8e-05 24.3 1.4 1 23 492 514 492 514 0.98
17 21 0.00046 0.084 14.9 1.3 1 23 523 545 523 545 0.98
18 21 0.00013 0.024 16.6 0.0 3 23 554 574 553 574 0.97
19 21 5.6e-06 0.001 21.0 0.7 3 23 582 602 580 602 0.97
20 21 1.1e-07 2e-05 26.3 2.7 1 23 608 630 608 630 0.98
21 21 6.9e-05 0.013 17.5 1.2 1 23 636 658 636 658 0.99

Sequence Information

Coding Sequence
ATGTTGGTTTTGGACATGATGGAATTGTGCGATGTTAATAATTTAGCTCTTAACCAAGGTAAGACGGGgGTACTGAAAACAGAGAGGACCACAGGATTTTCTTGTGAAATATGCGGAAGATCGTATAAACTCCACTATAGGCTGGCAAATCACAAAAAAGTGCACCATGAAGGTCTGAGGTATTTATGCGATGCCTGTGGCAAAGCGGATACTTCTCAGTACCCTGTGTTAACCCACAAAAAAGCGGAGCACTTCGGTATTAAATATACATGCCAGCAATGCCGAAAATCCTACAACACGCGAGCGTATCTGCAAACTCACAAGAATAACAAACACTCCGTCAATGCCACGCAGAAGTGCGAATACTGCGACTATGTTTGCACAACGTCGCGAACCATGACCACTCACATAGCCCGTCATACGGGCGAATGGAAACACAAATGCGAAACGTGTGGCGATGGTTTCCTGACACTTGGAAATTTGAAGAATCACGTTAGTACCCAGCACAGTGGTGTCCGCTACACCTGCGAAAAATGCAATAAGGTGCTCAGGAATGCTAGCTACTTTAAGATTCACATGGCCAAGCATGAGCCCGACTACGTCCAGGAGGAATTTCCTTGCGAGATATGTTCCAAAGTGTACCGCCACAAGAGGACTTACACTGCGCACATGAGAGAGCATAAAAATGGAGTCAAGTCGGCGGTTTGTGAAGTTTGCGGAAAGGTATTCACTTCTACTAGTGCTTTATGTCAACATGTACGGATtcataccggtgaaaaacctttCGGATGTAATACTTGCGGAAAAGGTTTCCGTACCAGAAAGTTGCTTAAAATGCACAAATTATCCCACACTAAGGTGAAACCTCACAAGTGTCAAATGTGTGAAAAAGCTTTCAGTCAGAGGAGTAACCTTAAGATACACATGCGATCTCATACAGGCGAACGGCCCTATCAATGCTCGATTTGTGAGCAGAAATTCGTCAGCAAACGTTTTCTGAATATGCATTTCAGGAGGCATGGAAAAGTGTGCTCCGATGTTGAAAACTCGCGTGTTATATGCGAATTATGCGGAAAATCGTACAAATGCCGTTTCACGCTGCTTGCCCACAAGAAGGCGCAACACGACGACTTCCGGTACGTTTGCGAATTCTGCGGAAAAGCCTACATTTCCCGAAGTTACATGATCAATCACAAGAGAGGAGAACACTACGGCATCAAGTACGCATGCGAGCACTGCGGCAAATCGTACAATTCCGCCTCGGATCTGCAAACTCACAGGAAGAGTAAACACAGCGGCGTCACGTACTCGTGCGAATATTGCGATTACGCATGCACTACGTCGTCTGCGATCGCCGCCCACAAGGCCCGTCATACTGGAGAATATAATCACAAGTGCGAACTGTGCGACGACGGCTTCCTAACGCTTAGAGATTTGAAGAAGCACGTTAACACGCGACACAGTGGCCTCAATTTTACGTGCGAGAAGTGTAACAAGGTCTTCAAGGACGCTAGCTACTTCAAAATCCACATGGCCAGGCACGAACCCAACTACGTACAGAAGGAGTACCCTTGCGAGATTTGCTCGAAGGTGTATCATAACGACCAGTCTTTCGCGAGACATATGAAGGAGCATAAGGACGGCGTCAAGAAGGCGATCTGTGAGGTTTGTGGGAAAGTATTCGCCAGCGGTAGGTCTCTGGACGAACACATACGTATCCATACTGGGGAGAAGCCGTTCGGATGTGACACTTGCGGGAAAAGTTTTCGCAATAAGAACCAGCTTATCGTACACACTTTGTCTCACACTAAAGAAAAGCCTCACGAGTGTCGAGTGTGCGAGAAGAGTTTCTCGCAGAGAAGTAATCTTACCATACACATGAGATCACATACGGGAGAACGGCCTTACCAATGCTCCATTTGCGAAGAGAAATTTGCGAGCAAGGCTTTCCTGAGAATGCATTCGAGAAAGCATATGAAATTACTATGA
Protein Sequence
MLVLDMMELCDVNNLALNQGKTGVLKTERTTGFSCEICGRSYKLHYRLANHKKVHHEGLRYLCDACGKADTSQYPVLTHKKAEHFGIKYTCQQCRKSYNTRAYLQTHKNNKHSVNATQKCEYCDYVCTTSRTMTTHIARHTGEWKHKCETCGDGFLTLGNLKNHVSTQHSGVRYTCEKCNKVLRNASYFKIHMAKHEPDYVQEEFPCEICSKVYRHKRTYTAHMREHKNGVKSAVCEVCGKVFTSTSALCQHVRIHTGEKPFGCNTCGKGFRTRKLLKMHKLSHTKVKPHKCQMCEKAFSQRSNLKIHMRSHTGERPYQCSICEQKFVSKRFLNMHFRRHGKVCSDVENSRVICELCGKSYKCRFTLLAHKKAQHDDFRYVCEFCGKAYISRSYMINHKRGEHYGIKYACEHCGKSYNSASDLQTHRKSKHSGVTYSCEYCDYACTTSSAIAAHKARHTGEYNHKCELCDDGFLTLRDLKKHVNTRHSGLNFTCEKCNKVFKDASYFKIHMARHEPNYVQKEYPCEICSKVYHNDQSFARHMKEHKDGVKKAICEVCGKVFASGRSLDEHIRIHTGEKPFGCDTCGKSFRNKNQLIVHTLSHTKEKPHECRVCEKSFSQRSNLTIHMRSHTGERPYQCSICEEKFASKAFLRMHSRKHMKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-