Caur042080.1
Basic Information
- Insect
- Cetonia aurata
- Gene Symbol
- -
- Assembly
- GCA_949128085.1
- Location
- OX421889.1:14141484-14141951[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 2.4e-07 31.9 0.0 1 36 18 52 18 58 0.90 2 2 1.7 2.5e+02 3.1 0.0 12 25 127 139 125 139 0.81
Sequence Information
- Coding Sequence
- ATGGTGCGGACATATGAGAGGACCCCAGGgtcaagaaattataaaaattataccgACGAAAACCTGCAAAATGCAGTAGAGGCCGTTAGGGCCGGTATGTCCCAGAAATTGGCCGCGGAAACCTTTAAGGTCCCCCGGGCAACTCTACAGCGGAAGCTTCTCGGAAGAAATTTGAACCCAATTGGTCACCCAAGAGTTCTGTCGGACGAGGAAGAGGCCACCATTACGGACACTCTTGGAATTGTTGCCAATTGGGGATTCCCATTAACTAGATACGATGTAAGGATGCTAATAGGAAAATACAttgaaaaacaaggaaaaactgttaaattatttaaaaataacatcccAGGAGACGATTTTCTCAATAGTTTTATTGTCAGGAACAATTTATCAATACGACGGGCATCCAATATCAAAAGATCTAGAGCGTCCGTTgataaagaaaacataacaaaaaaattgtga
- Protein Sequence
- MVRTYERTPGSRNYKNYTDENLQNAVEAVRAGMSQKLAAETFKVPRATLQRKLLGRNLNPIGHPRVLSDEEEATITDTLGIVANWGFPLTRYDVRMLIGKYIEKQGKTVKLFKNNIPGDDFLNSFIVRNNLSIRRASNIKRSRASVDKENITKKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -