Cten081861.1
Basic Information
- Insect
- Ceriagrion tenellum
- Gene Symbol
- Prdm15
- Assembly
- GCA_963169105.1
- Location
- OY720637.1:115425174-115446341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.032 30 8.3 1.8 2 23 102 124 101 124 0.92 2 13 0.00012 0.11 15.9 2.1 1 23 215 237 215 237 0.98 3 13 0.065 60 7.3 0.3 1 21 241 261 241 262 0.93 4 13 3.6e-07 0.00033 23.9 0.6 1 23 270 292 270 292 0.98 5 13 0.072 67 7.2 2.8 1 21 296 316 296 317 0.94 6 13 3.8e-06 0.0035 20.6 1.8 1 23 334 357 334 357 0.95 7 13 0.23 2.1e+02 5.6 0.2 1 20 365 384 365 385 0.79 8 13 1.7 1.6e+03 2.9 0.2 3 23 401 421 400 421 0.93 9 13 0.1 93 6.7 3.9 1 19 425 443 425 445 0.83 10 13 0.0032 3 11.4 0.3 2 23 452 473 451 473 0.95 11 13 1.5 1.4e+03 3.0 3.3 1 19 478 496 478 496 0.96 12 13 0.00026 0.25 14.8 0.0 2 23 541 562 540 562 0.96 13 13 3e-05 0.027 17.8 3.0 1 23 567 589 567 589 0.98
Sequence Information
- Coding Sequence
- atgatccAGAGAAAGATAGATGCTTTGACAGACCATGTGTATGGAACTCCTAGAAAAGAGAAGAAAGTTGTCCAGAATATGCTTTTAAATAAGGAAGTGACTGAGAAGATTGTGGAAAAGCTGGCTCCTCAGCAGCTGGGTGCAAGAAGTGAGAATGCTGAGAAGAAGTGGCGCTGTCGCCTGTGTGGGGAGGAGGTGGTAAaggagggtgtgggagggggtAGTGGGGTAGCCACATTTGCCAAGCACCTTATGGCACACTACAGGCCTCGACTGGGCCGCAGTTCGGCACAAAAGTCATGGCCATGCCACATCTGCCTCAGGAACTTCCGAGGTGAGAAGGAGCTCCTGCACCACAAGGTTAAAGAGCACAAGGTGGCAGTCCGACGTCCTCGTCTGTTGGGTCACCAAGGGGCTAAGGAGGAGTCAGGATTGGGTGCTGATACTCTAAAGGTGGAGGTAGCTGAGGTGGAGAACACACAGGATGGATATGAATGGCAGCAGGAAGGAGGCAAGACTACAAGCATTGTCATAGCAAGGATACCAGAAGGGCAAGAGAATCCACTGCTGAAAGATGCTGGCTGCATGACCATATCAGTAAAGCCAGATAAGTCTGTGAGTGGCGTGGAGTTGGGACCACCTTATATCTGTGACATCTGCAGCAAGGAATTCCACCGTGCTGAGTATGTTTACCGCCACCTGCGCAAGCACACTGGTGAATTCACGTGTGTCTCCTGCATGGCGGTGTTCGCCAGGAAAGAGAGCCTTCAGACTCATGTTTGTGTGGGAGGCGTTGCATCAAATCTGTATTCCTGCACATACTGCCCCAAAATGTTTTCAGTGCCCAAGCTCCTAAAGAGGCATATTGCTAAGCACAAAAGTGAGTTTACATGCCAACTCTGCAAGCACATCTATGCATCCAAGGCATCCTTAGATGCTCATCACTGCTCTAAGGAAGATGAAGAGAAGACCTCCGTAGGTGGTCCAAGGACCAAGAGCTACAGCTGCTCTATTTGTGGCAAGGGTTTTGTCAACCAGAATTACCTGCGAAATCATTTGTCTCACAACCACCCAAATGATGAGCACCTTAGCTACAGTTGCCAGTTCTGCGAGAAGAGCTTTCTACTGCCAGAATCAATGGAGGAGCACCAGTCTTTCTGCAAGCAGGTGAAGCAGCTAGAAGGTGGTGAAAAGGCTTCCTGCCCAATGTGCAAGTCATTTTCTGATGATGTGGTTGCCTTCAGAAGTCATGTGAGGGATCATACGCACCCATTCTTCTGTCAGCACTGTGGTACCCGTTTTAAGACCCGTAAAATGTCAGCCAGACATGCATGTGACCTCGATAGCTGCCTCAAGTGTGAGGTTTGCAAGGAAGACTTCCCAACTTACCAGGCCCTCCTTGCTCACCTAGACCATCATGGTGCAGCCACTTTCCACTGCTTTGAGTGCAGTCTCAGCTTTTTCTTGAATGAGTCATTTGAGAAGCATGATTGCAGCAGTTGCCAGGAGATGCGTGGTGATTATAAGGCGAGGAAGCGGAAAGGCAAGGAAAGGGCAGGGGGTGTGGTTGCCCAAGGAGATGGCAGTGGTGCTGGTGGTGTGACAGGCAGCACCAACCTCATCTGTGAAGTTTGCGGTGCACAGTACAAGACTGTATACAGCCTCAGGGCTCACATACAACTACATGGGGAGAGGCGATTTGAGTGTGACATTTGCCACAAGCGATTCCATCGCAAAGACGTTCTGCAGGAGCACATTTCCGTGCACCAGGATCCCCAGGTGGGTGCCATGTCACATGTACTGCATCTCAATCTCACGTTTGTAAAAGTGTTGGCCACCCCTTCTTGA
- Protein Sequence
- MIQRKIDALTDHVYGTPRKEKKVVQNMLLNKEVTEKIVEKLAPQQLGARSENAEKKWRCRLCGEEVVKEGVGGGSGVATFAKHLMAHYRPRLGRSSAQKSWPCHICLRNFRGEKELLHHKVKEHKVAVRRPRLLGHQGAKEESGLGADTLKVEVAEVENTQDGYEWQQEGGKTTSIVIARIPEGQENPLLKDAGCMTISVKPDKSVSGVELGPPYICDICSKEFHRAEYVYRHLRKHTGEFTCVSCMAVFARKESLQTHVCVGGVASNLYSCTYCPKMFSVPKLLKRHIAKHKSEFTCQLCKHIYASKASLDAHHCSKEDEEKTSVGGPRTKSYSCSICGKGFVNQNYLRNHLSHNHPNDEHLSYSCQFCEKSFLLPESMEEHQSFCKQVKQLEGGEKASCPMCKSFSDDVVAFRSHVRDHTHPFFCQHCGTRFKTRKMSARHACDLDSCLKCEVCKEDFPTYQALLAHLDHHGAATFHCFECSLSFFLNESFEKHDCSSCQEMRGDYKARKRKGKERAGGVVAQGDGSGAGGVTGSTNLICEVCGAQYKTVYSLRAHIQLHGERRFECDICHKRFHRKDVLQEHISVHQDPQVGAMSHVLHLNLTFVKVLATPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -