Cten076605.1
Basic Information
- Insect
- Ceriagrion tenellum
- Gene Symbol
- br
- Assembly
- GCA_963169105.1
- Location
- OY720637.1:42197911-42215649[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.3e-06 0.003 20.8 3.2 1 23 610 632 610 632 0.98 2 10 9.9e-07 0.00092 22.5 1.7 1 23 638 660 638 660 0.98 3 10 1.9e-07 0.00017 24.7 1.3 1 23 666 688 666 688 0.98 4 10 7.5e-06 0.007 19.7 2.5 1 23 694 716 694 716 0.98 5 10 3.9e-06 0.0036 20.6 1.4 2 23 725 746 724 746 0.96 6 10 5.5e-05 0.051 17.0 1.3 1 23 752 774 752 774 0.98 7 10 4.5e-06 0.0042 20.4 1.5 1 23 780 802 780 802 0.96 8 10 8.7e-06 0.0081 19.5 0.1 1 23 808 830 808 830 0.98 9 10 2.9e-05 0.027 17.9 7.8 1 23 836 858 836 858 0.96 10 10 3.3e-05 0.031 17.7 0.5 1 21 864 884 864 885 0.93
Sequence Information
- Coding Sequence
- ATGTCTCAGGATCTTCTAGGCGTCAATTCCCAATCATCTCCACTCAGAAACACCATCCAAGAGCTGCGTCTCATAACCAAGGACTTCCTCAGGACGGCCACACTATGTAGCTGTTCACCTCCCGAAAGAGCTAGCCAATACAATACTCCGCTCTCTCCTTACAGGCAGACTGGAGGAGACATGGAGAACCACCTGCACGTCCAGTGGAAACACCACCAGGAGGGAGTCCTCAAGTTCCTCGAGGAGCTCCAGGCGACGGAGACGTTTGTAGACGTGACCCTGTGCTGCGAAGGGCAGAGGCTCAAAGCTCATCGCGTGGTCCTGTCCGCCTGCAGTCCGTACCTACAGCAAGTCCTCGTTGACAACCCTGGTGAGCATGCGACCATAATACTCCACGACATCGGCGCCGAAGAAATGAGGTCGCTCCTTAGGTTCATGTACTCTGGCTCGGCCAGTTTACCGAGGCGCTGCCTCCGGGCCTTCCTCCGCGCGGCCCACGCCCTGCAAATCAGCGTCCTCATGCCGGGAGCGGAACACGCGCTCACCGAAGAAATACCTCACCAAACTCACCTCGGCATGCCGCAGCCGAGTGACAAGGTGGACATAGCCGTTCCGCTGCCACGGCTGGCGGTGCCTGAAATCATGCTGCCGCACGATCTCTCCAAGTCTACCGGTGTCAATTCTGAAGCGCACCATGGATTAGTGGTCAGCGAGGACGGCTCGAAGCGGAGGCGGCACTGCACCAGCGGAGCTCCAGTCAGGACTCCTGAGGTTCCCCAGCAGTCCCTGTACCAGAGTGAGGACTCTTGGAGCAACGCTTTCCGTGAGGGCCTAATGGACCACTTGTCGGTCCCTGGCAGGCCCGCTCTGGTCCCCCCGAGGCCCACGGCGGTCGTCAAGTCACCCTGGAGTCAGAGGATTGAAGCGGGCACGGCACCGTGGAGGCCCTCCACGGTCATAGCCCCGGTTCGACCCCCGACGCCCCCGTCGTCATCCCCGAGAGTCGAGCCCATGGTCTGCCAAGCGTCTAGCATGGACTTGCTGACAGTTCCAGGGATATCACCCGAAATTAGAAAGCCCTTCTTTTGTCCCTCACCATTGTGCTCGTCCCCTTCCTCTACCTCTTCTATATGCTCATCCGCATGTTCCTGGGCGCCCACTTCCCCTTGCCTGTCATCCCCGCGTCCTCCATCCCTCCTGTCTGTCCCCAGTAAGAGCCACGCGGCGGTGTCCCCCGCCGAAGGCACAGCCCCTCTGGCCGTATCCTCTCCCAACCTGAGAATCCTGTCCCCCAACCCAGCTCCCGTACCCAACTCCAACCAACCCTCCACTCCCACCACCCAGCCATCCCCACCGGCCTCTCCTTCTCGCTTCACCCTGAAGCAGCGACGCCTGCGGGACTTCTACAGGTCCCTACAGTCAACAGGCAACACCTCCGCGGAAGACTCTCAGAGCAGCGACCGTCAGCTCAGCCATCCCTCCCTGGAGAACAAGGACGAGGACTCCTTGACTGTTCCGGCGTCTCCAGTGGGTGCGGTCTCACCTTCGAGGCCCCAGTGGCCTGGGAAACCCTCAGCCACAGTGGAGCAGTCCGTAATCAGGCTTTCTAAGAAGTCGGCCTTCCAGCCGCCGATGATAGTGGTGTCTCCTCCCCAGTCCGTACAGGAGACTTCAACGGGCAGTGGAGACTTCAATGCCCGCGATGAGGCCCAGCAGTCGCCTCTGCCCGCATTGCCTGCCCTAGTGGTCCCGCCCCCGACGTCGCCTGGTGAGACAAGCCTTCAGGGCCCACCGGCTGCCAAGTCACCCTCCGGCAGCAGCGGTCCTCACACATGTGAGACCTGTGGGAAGACGTTTGGGCGCCGGCAGCTGCTGGAGCAGCACAGACGGACTCACACCGGTGAGAAGCCTTTCGAATGCAACCTGTGTGGGAAGAGCTTCACTCAGCGTGGCCACTGGAGCGTCCACCAGAGACTTCATGATGGCTCCCGGCCGCACGTTTGTCCCGTGTGTGGGAAAGCCTTCGTGTCCCGGGCCTCTCTCAAGGTCCATCACCGCACGCACACGGGCGAAAAACCATTCCGCTGCGAAGACTGCGGAAAGCAGTTCAGCCAGCTGCGCAACTTTAAGTACCACCGCTCCGTCCACGAGGGCACCCGGGAGTTCGCCTGCACGTGCCCCGAGTGCGGCAAGCAGTTCAACGACCGCGGTTACCTGAGCTCCCACCTCAAGATCCACCGCAACCGTAAGGAGTACGCATGCGAGCACTGCGAGAAGCGATTCAACCAGCGCGTGGCCTACAACATGCACGTCCGGATCCACACCGGCGAAAAGCCTCACGCCTGCGAGGAGTGCGGCAAGAGGTTCGGCAGGAAGATGCTGCTCCGCCAGCACGCCCGCACCCACACCGGCGAGCGGCCGTTCCGCTGCGCTGTCTGCGGCAAGGCGTTCGCGGACCGCAGCAACATGGCCCTCCACGCCCGGCTGCACAGCGGCGAGAAGCCTCACTCGTGCGAGCTGTGCGGGAAGGCCTTCACCAAGAAGCACCACCTCAAGACCCACATGAACTTCCACACGGGAGTCAAGCCTTACGCTTGCGAGAAGTGCGGTCTCCGGTTCAGCCAGTCCAGCAACATGAGGACGCACGCGAAGAAGTGCACGGCGGAGAGGGGCTCGGCCGCCGGCGGTTCCGCGTCGGTGACGCCCGAGGTCGCTTCGGACAGTCAGGGGAGCCTCTCGGTGTCCCTGCCGGCGAAGAAACCGGACCACCGGCCCGAGCCTACGACCCCGTCGTCAAACGAGCCGAGATATGACCCGGCTCATGGAACTGGAGGGGTCGAGATGGAGGTGCCCGCAACAACCGCGCCCGTTGTCTCCTTTAGTCAAGCACTGATCACGGCCGCATCTACAAGGAACTCCTCAATCAAGTCTCCTTCTCCAAAGGCGACAACATGCATCAAGAACAAGGACATATCTCTCTACTTGGAGAGCAAGGACCTGGTGTTTGAGAAGGCCGAGGAAATTGCTGCAGCGAGGGAAAAGGCATCACACAACGTGGAAGCCTGCTTAATGGCATCCACTACGGGTACTAGTGATGTGGTTGGCATCCATTTTGTGGAGGATGGGGCTTCAAGGAGCACTGACGACAGGATGTATGCACCGCCGGAAAGGTGTTGCCAAGCGGAAGTTCACTGA
- Protein Sequence
- MSQDLLGVNSQSSPLRNTIQELRLITKDFLRTATLCSCSPPERASQYNTPLSPYRQTGGDMENHLHVQWKHHQEGVLKFLEELQATETFVDVTLCCEGQRLKAHRVVLSACSPYLQQVLVDNPGEHATIILHDIGAEEMRSLLRFMYSGSASLPRRCLRAFLRAAHALQISVLMPGAEHALTEEIPHQTHLGMPQPSDKVDIAVPLPRLAVPEIMLPHDLSKSTGVNSEAHHGLVVSEDGSKRRRHCTSGAPVRTPEVPQQSLYQSEDSWSNAFREGLMDHLSVPGRPALVPPRPTAVVKSPWSQRIEAGTAPWRPSTVIAPVRPPTPPSSSPRVEPMVCQASSMDLLTVPGISPEIRKPFFCPSPLCSSPSSTSSICSSACSWAPTSPCLSSPRPPSLLSVPSKSHAAVSPAEGTAPLAVSSPNLRILSPNPAPVPNSNQPSTPTTQPSPPASPSRFTLKQRRLRDFYRSLQSTGNTSAEDSQSSDRQLSHPSLENKDEDSLTVPASPVGAVSPSRPQWPGKPSATVEQSVIRLSKKSAFQPPMIVVSPPQSVQETSTGSGDFNARDEAQQSPLPALPALVVPPPTSPGETSLQGPPAAKSPSGSSGPHTCETCGKTFGRRQLLEQHRRTHTGEKPFECNLCGKSFTQRGHWSVHQRLHDGSRPHVCPVCGKAFVSRASLKVHHRTHTGEKPFRCEDCGKQFSQLRNFKYHRSVHEGTREFACTCPECGKQFNDRGYLSSHLKIHRNRKEYACEHCEKRFNQRVAYNMHVRIHTGEKPHACEECGKRFGRKMLLRQHARTHTGERPFRCAVCGKAFADRSNMALHARLHSGEKPHSCELCGKAFTKKHHLKTHMNFHTGVKPYACEKCGLRFSQSSNMRTHAKKCTAERGSAAGGSASVTPEVASDSQGSLSVSLPAKKPDHRPEPTTPSSNEPRYDPAHGTGGVEMEVPATTAPVVSFSQALITAASTRNSSIKSPSPKATTCIKNKDISLYLESKDLVFEKAEEIAAAREKASHNVEACLMASTTGTSDVVGIHFVEDGASRSTDDRMYAPPERCCQAEVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01286706;
- 90% Identity
- iTF_00307053;
- 80% Identity
- iTF_00307053;