Cruf014260.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cerceris ruficornis
Gene Symbol
-
Assembly
GCA_963989415.1
Location
OZ022519.1:11367389-11370152[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 1.1 1.9e+02 4.0 0.2 3 23 253 274 252 274 0.96
2 10 3 5.3e+02 2.6 3.6 1 23 280 302 280 302 0.98
3 10 7.1e-05 0.013 17.1 1.1 1 23 308 330 308 330 0.96
4 10 0.00024 0.042 15.5 3.2 1 21 336 356 336 358 0.93
5 10 6.4e-07 0.00011 23.6 0.8 1 23 367 389 367 389 0.98
6 10 1.5e-07 2.7e-05 25.6 0.5 1 23 395 417 395 417 0.98
7 10 1.5e-05 0.0026 19.3 0.6 1 23 423 445 423 445 0.96
8 10 1.4e-05 0.0024 19.4 2.9 1 23 451 473 451 473 0.98
9 10 0.00075 0.13 13.9 5.2 1 23 479 501 479 501 0.98
10 10 0.00017 0.03 16.0 5.8 1 23 507 530 507 530 0.98

Sequence Information

Coding Sequence
ATGACGGAGCCGGAACTCTGCCGGCTCTGTGCCGAGACCAAAGAGAACTTCATTGGGATATACGACGCCGAAGGACAAAAGCTAGCGATTGAAGCAAAAATTGCCAAATGTTTGCAAATTCAGgTATTGATAACTGATGGATTGCCACTTACAGTTTGTATAGACTGTTGCATTTTATTAAATCAGTGcagtgaattttttgaaaaaactaaTCAGGCACAAACGTCTCTGAGGCAGTTACTCATAGATCCTAAATCAGAACCTCAATCATTAGAATCAAATATAGATTACGCTGAGAAAACAGTCGCATTCCCAAAAGAGGAAGAAGTTGGGGAAGGAATTGTCGAATGTCAGTTACCTGATAATTACATCAATGAATCTGTCACTGATATTTCTGACAGTTATTTTATCGAAGAAAGTAAAACTAATGAACAAGATAAATACGGAACAGGAGAGTCACAAGACATAGTAAAACAAAAGAAGTGTAAAGTACAAGTGAAGAAAACTTCCCCTAAACAAGCCAGGAAGAAGTTGAAACAGAAAAATCAGAATCAAAAAATGGAAGATTCAGAATTATGCATAAGCACAGTTTTAGAAAAAGACCATAATGATGTAAATGTAAGAAACAATGTAAAAATTCCTGATAATTATATGACAGGTACGGAATCAGATTTAGAAATTATTGAAACACGTGCATCAGAAGCATCAAAAGGAGGTCATAAAAGAAGTGAAAATTTAGATAGATACCCTTGGCTTTGTACCGACTGTAATGATAAATTACCTAGTTTGGAGGCATTAGAAGAGCATCATGAAACAGTTCATAATCAACAAGCAAAATACATGTGTGTGCAATGCTGTAAAGTTTATGATAAGTACTATGGTTTTCTCACACATGTGAAAAGACATAAAAATAAGGCAAAATTCAGTTGTGAAGATTGTGGGAAATCATTTGTACATAAGAAAGTATTAGATTCTCACAAAGCTATTCACAGTGAAGAACGTCCTCATGTATGTCAAACTTGTGGAAAGGCATTTAGGCAACAGAGTGCTTTATACATCCATAGTCGGTGTCATTTACCAGACACCATGAAAAATAGATTTCCATGCGATCAGTGTGACAAaagATTTTCAACAAAACCAAACCTAGTGACACATAAACGAATACATTCAGGTGTTAGAAATTTCACGTGTGATCAATGTGGCAAGAGTTTCATTCAAAAAGGAAATTTGGAAGCACACTTTTTAACTCATTCAGCAGATAAGCCATATAACTGTTCTCAATGTCCAAAAGCTTTCAAAACTCCATTACAATTAAAGAAACATGAAACAGTCCATACTGGAGCAAAGCCACATCAATGTGCTGTCTGTGGAAGAACTTTCAGAGAAAAGGGTACATTAAGAGAGCATCATAGAATACATACAGGGGCAATGCCATTTACTTGTGAATTTTGTGGTAAATGTTTTCGTTTTAAAGGAATATTAACAACACACAGAAGACAACATACTGGTGAACGTCCATATAGTTGCTTAGAGTGTCAGCATCATTTTACTAATTGGCCaaattataataaacatatGAAACGTAGACATGGAATTAATACATCACACACTAAACATTTATCTCAGTCCCAACATGTACAATCGCAACAGCAGCAATCACAGCAACCACAGTCAGAACAATCACAAGTAATCCAATCTAATCCATCAGACAACCCACTTTCTATACCGCACACAGAAGCTCCAACAGTtcaaGTAATACAGGCTGTTCCCCATGCATCAGCACCTCAACCAATTGTTGTGCAAGCTATTCCAACAACTGCAATTCAAAATTTTCAACCTGACGTATCTAGTACTGTGCAAGACACAGTATTCCGAGAAAGAAACACGGCATATTTTAATACAATGCCGGCAGCTTTACAAAACTTTCTGCCACCtaatctaccatataatttttataatatttcaaatgtCGCAGAAAACGATTTAATTCAACATAGGTaa
Protein Sequence
MTEPELCRLCAETKENFIGIYDAEGQKLAIEAKIAKCLQIQVLITDGLPLTVCIDCCILLNQCSEFFEKTNQAQTSLRQLLIDPKSEPQSLESNIDYAEKTVAFPKEEEVGEGIVECQLPDNYINESVTDISDSYFIEESKTNEQDKYGTGESQDIVKQKKCKVQVKKTSPKQARKKLKQKNQNQKMEDSELCISTVLEKDHNDVNVRNNVKIPDNYMTGTESDLEIIETRASEASKGGHKRSENLDRYPWLCTDCNDKLPSLEALEEHHETVHNQQAKYMCVQCCKVYDKYYGFLTHVKRHKNKAKFSCEDCGKSFVHKKVLDSHKAIHSEERPHVCQTCGKAFRQQSALYIHSRCHLPDTMKNRFPCDQCDKRFSTKPNLVTHKRIHSGVRNFTCDQCGKSFIQKGNLEAHFLTHSADKPYNCSQCPKAFKTPLQLKKHETVHTGAKPHQCAVCGRTFREKGTLREHHRIHTGAMPFTCEFCGKCFRFKGILTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSHTKHLSQSQHVQSQQQQSQQPQSEQSQVIQSNPSDNPLSIPHTEAPTVQVIQAVPHASAPQPIVVQAIPTTAIQNFQPDVSSTVQDTVFRERNTAYFNTMPAALQNFLPPNLPYNFYNISNVAENDLIQHR