Cruf019749.1
Basic Information
- Insect
- Cerceris ruficornis
- Gene Symbol
- -
- Assembly
- GCA_963989415.1
- Location
- OZ022520.1:30837316-30840451[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.057 10 8.0 0.6 6 23 261 278 258 278 0.92 2 13 0.013 2.3 10.0 1.0 1 23 283 306 283 306 0.96 3 13 0.00024 0.042 15.5 0.6 3 23 320 341 319 341 0.96 4 13 0.0044 0.78 11.5 0.3 3 23 354 374 354 374 0.98 5 13 9.4e-08 1.7e-05 26.2 1.5 2 23 418 439 417 439 0.97 6 13 0.0047 0.82 11.4 0.5 1 23 444 467 444 467 0.93 7 13 0.98 1.7e+02 4.1 1.6 2 23 538 559 538 559 0.96 8 13 3e-05 0.0052 18.3 4.3 1 23 568 590 568 590 0.97 9 13 2.3e-06 0.0004 21.9 3.9 1 23 599 621 599 621 0.98 10 13 0.027 4.7 9.0 4.3 1 22 627 648 627 648 0.95 11 13 6.5e-05 0.011 17.3 1.5 1 23 673 695 673 695 0.99 12 13 0.11 19 7.1 0.0 1 23 759 782 759 782 0.97 13 13 7.2e-07 0.00013 23.4 5.6 1 23 787 810 787 810 0.98
Sequence Information
- Coding Sequence
- ATGGCTGTGACCAACAAGTGGGAGAATGCTTGCAGATTGTGCTCAGAAGAAAAGAATGAGATGCTGTCAATCTTTGGTAATGAGGGTATGCAGCGCAAGGTAGTACAGAAGTTACGCGCCTGCCTACCGGTCTTAGTGTACAAAACTGATCCACTGCCTAAGCAAATATGCCAGTTTTGCGCCGCGAGGTTGGACGACGTGTACGAATTCAGAGAATATTGCTTGAGCGTATACAAAAACATGCATTTAAAGTTATTGACGTACAAGAACATCGAGTCTGTACAGATCTTTTTAGAAGCAATGAAAAACTCTCCCGATCCTTGTCAGGCACAACTCTGGAAGGTAAAAGCTAGAGCACCGCCGCCGCTTGTTCCTTTGCCTGCTACACTGCCAATCGAAAGTCCATTGACGCCGATAGATATAGATCAGGAACAGCAACCAAATACTTGTATCGAAACATTGTCCGAATTGCCATGCGAAGTAGAGATTAAAGTAATGAATACAGAACCTATAATAGCGAGTGacgttaatatttatgaaacggCAAATTCCAACAATATGGACATTGAATCTTACGATACGAACGTTGTAACGGATGATAGTATCTCGTTGGATGATTCAAAGGATGAGATGACAAATTCCAATGACGAAAGTCAGGacaagaaggaagaaaagaggACCAGTATTTTAGAACAAGTATTAACCGGTAGTTTGACTATGAATGACTGCAAAGATTTAAACACCGAGGCAAAGTTAACATCTAAGTGGTGGTGTGCCCCTTGTAATAATTACTATAAAACCAGAGAAAGTCTAATGAAGCATATGCAGTTGCACTGTCCAAGAAAATATACATGTAGAAAATGTTCGGAGTGTTTCGAATTAGTAGAAGACTTAGCTAAACACGAAGCCACTAGCCATTTAAAAATTACCCTAGACTTTGATGACAATTTTAAAGACTGTGACCAATGTAATAGACAGTTCGTGAGCTGGGAAATGTTAAAGCAACACAGACTACGCGATCATTTAGCCGAGGCCATTGAAATTGGGACCAATACGTGGTGCTCCTTATGCAATAGGTTTTTCCCAAGCGTGGAAGAATATCAGAATCATATTCAATTGCATGAAATTACCGACTACACGTTGCCAAAAACGCCATCATCTACCGATACAATCACAATAACGACCCACAGAAACGAAGAATcttcgaaagaaataaaaaaagaacacttTCTCGAAAATACTAAATCTCTTACGTGTCCCACCTGTGGAAAGGTCTGCACGCAACAAAGTGCATTGTCAAATCATATGCGAACCCATGAACCCAAGAGGCACAAATGTGACATTTGCGGACGATCTTTTGGACTTTTTATACGTTTAGCAGCACACAGAATGAGCGAACACAGTCAGCAGCCTACGATGTCACCGATCACAGCCAGCGTCGAACAGGAAGAAGCATTAAATGCACAGAGGGAAGCCAGAGAAGCTAGAAGTGGTGCAACGAGAAGTCGAACTTACTCGGAGATTGCCAACAGAAAAGACATCTCTAATCACGACGAACCACCCGCGAAACGTACCGCTTCTCTAAACAGTAATGCATTTAAAAACGTAGCAAGATGTGGTATTTGCTTGCAGTGGTTTAGCGATCATACCACAATGCTGACACATTTGCAAACGCACTCTGACAATTATACCTGCAAAAATTTCAATTGTCACATATGCAAGAAATCTTTTAAAGAAAAGTGGCAACTGTTTAGACACGAGATGTCCCACAAACGTAACGAGACCGTAGCCATGCATACGTGCAATGTATGCAACAAGTCATTTGTTGACAAGAGTGCATTCAAGACGCATCAAAAATCGCACACCGTCGACAGGACGTATCATTGCtcaaaatgcaataaaattttcttCAAAGAGGTATCTCTATTGACTCATCAGTGCACGACCGAATCTCTATTTAGTAAGAAAGCGACATCCTCGAAATCGGTGCAAAATTCTACGAGTAACAATAAGAAGTACAGATGCACCAAGTGCAATGCATCATTCAGTTCTGCACAATCGAGAAATTCCCACATGAAGGTACATATGAAGGACACCGATGCCGCCGCACAACGTCACGAAATAAAAATAGAGTCAGAGGAAGAATCGATGCCGCAATTAAGTCCTGAAACGTCAGTGGAATGTATAGTTAATCCAATCGAGCCAAAAATCGAGATAAGCGAAGACGCAACACCACCTCCTATCAAACGAACTCTTATCAGGACAGGTGGAGGATACCGATGTGGAGTATGCCAGTCTCCGTTTGTTTTACGAGACTTAGCCGTGGCACATTTAAGATCAGCCCATCCACTTATGCCCTATCAGTGTCCTTATTGCAAAAAAAGGTTCACGACGCAATACATGTTCACCCATCACATTAAAACGGATCATGTCGATGAGCATGAGAATTAA
- Protein Sequence
- MAVTNKWENACRLCSEEKNEMLSIFGNEGMQRKVVQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKNMHLKLLTYKNIESVQIFLEAMKNSPDPCQAQLWKVKARAPPPLVPLPATLPIESPLTPIDIDQEQQPNTCIETLSELPCEVEIKVMNTEPIIASDVNIYETANSNNMDIESYDTNVVTDDSISLDDSKDEMTNSNDESQDKKEEKRTSILEQVLTGSLTMNDCKDLNTEAKLTSKWWCAPCNNYYKTRESLMKHMQLHCPRKYTCRKCSECFELVEDLAKHEATSHLKITLDFDDNFKDCDQCNRQFVSWEMLKQHRLRDHLAEAIEIGTNTWCSLCNRFFPSVEEYQNHIQLHEITDYTLPKTPSSTDTITITTHRNEESSKEIKKEHFLENTKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQPTMSPITASVEQEEALNAQREAREARSGATRSRTYSEIANRKDISNHDEPPAKRTASLNSNAFKNVARCGICLQWFSDHTTMLTHLQTHSDNYTCKNFNCHICKKSFKEKWQLFRHEMSHKRNETVAMHTCNVCNKSFVDKSAFKTHQKSHTVDRTYHCSKCNKIFFKEVSLLTHQCTTESLFSKKATSSKSVQNSTSNNKKYRCTKCNASFSSAQSRNSHMKVHMKDTDAAAQRHEIKIESEEESMPQLSPETSVECIVNPIEPKIEISEDATPPPIKRTLIRTGGGYRCGVCQSPFVLRDLAVAHLRSAHPLMPYQCPYCKKRFTTQYMFTHHIKTDHVDEHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -