Cruf024266.1
Basic Information
- Insect
- Cerceris ruficornis
- Gene Symbol
- -
- Assembly
- GCA_963989415.1
- Location
- OZ022522.1:18338936-18340693[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.3e-05 0.013 17.1 0.4 1 23 79 101 79 101 0.97 2 13 0.021 3.6 9.4 1.2 1 23 140 163 140 163 0.98 3 13 0.00017 0.03 15.9 4.0 1 23 175 197 175 197 0.97 4 13 0.0029 0.5 12.1 2.7 1 23 205 228 205 228 0.94 5 13 0.0071 1.2 10.9 5.9 2 23 303 324 303 324 0.98 6 13 8e-05 0.014 17.0 2.8 1 23 333 356 333 356 0.98 7 13 0.011 2 10.2 2.0 1 23 371 394 371 394 0.95 8 13 1.3e-06 0.00022 22.6 1.2 1 23 400 423 400 423 0.96 9 13 0.013 2.3 10.0 0.8 3 23 430 451 428 451 0.94 10 13 0.00025 0.044 15.4 0.5 1 23 456 479 456 479 0.97 11 13 1.9e-08 3.3e-06 28.4 0.4 2 23 486 507 485 507 0.97 12 13 2.2e-07 3.9e-05 25.0 0.8 1 23 513 535 513 535 0.98 13 13 3.9e-07 6.8e-05 24.3 0.1 1 23 541 563 541 563 0.98
Sequence Information
- Coding Sequence
- ATGCGACTTTGGCAACAGATCGATGTTAATGGTAAATTGAAGTATATGCTGATGCCAGCATTGAATGAAACAGCGAAATCCGAAGAAAATTCCACGTCACTTACGACCTTGCCGTCCATCAAGATCGAAGAAAACGACGACCATGCCGAACCGAGTGTCCAGAAGACGACGAACGAAGATGGCAATCGTTTTGTTGCTTCTTTCGCACATTTCTGCGAAGTGGCTGTAGACTGTTACACGTGCGATAAGTGCGGATTGAAGTTTCCCTTGGAGAGTATGCTGAACAGACATAAAGCGTCGCACAGATTTTGTTATTGGCTCCGGAGGAAGCATTTGAATGAGAAGTATATAAGTAGACTTAGAGCGAATGTGAAGAGACCTGGTAAAGGATCGAAAGTAGAGAAACAATTGAAGAAATACTCTTGCAGCATGTGCAATTTCACTTCCGACAAACGTATCGGCTTGACGTTGCATGTTAGAAGGAAGCACAAATTCTCCGGGGATAAAAAAGCTCCTGGAGAATTCCCCTGCGTGATATGCGGTGTTAAGTGCAAAACTCAGGCGAAATTGAAGAAGCACATGTGCCAGCACAGAAATACGAGCACCATGTACTTCAAGTGCAATAAATGCGGGTTCGAATGCAGAAGAAGCAGCGTCCTGGTATCGCATACGATTCAAAGTCACAGGAAAGCTGGTAAAACTACTAAGCAATGCACCAGGAAGAAATTCACTGGGGCAAAGTGTCATTATAAATCATCGCAGAGAGAAGATTCCAATGATATGAACCTGCGCGACGTGAAGAAGAGCAATCCTGTTCCGTCCGCTCCTCCGATGGAATTCGAGTGCAAGAAAGAATCCCAAGTGGCCAGTCGTGTGAATAGAAAACAGAAGAAGACCTCCGAAGAGCAGTGCAATCTCTGTGACTTCAAATGCACCACGAAAAGTACCCTGTATTCCCACAAGAGGCAGCACAAGGTCGAAAACATCAGTGAAGTGTACTCCTGCAACGAGTGTGGCTTCAAAACGAGCAAGAAATCGTCTCTTTACTCGCACATCAAGAGAAAACACAAAGTAACTAAGTCCTGCACGGGCAGCGATCAACCTGAACTATTTTACTGCAATCAGTGCGACTACAAGAATAAGAACAAATACGAGTTAAAAGTCCACGTAGCTAGGAAGCACACGGACGACTTCAAGTTCTCCTGCGAGACCTGCGGGAAGAAGTTCAAGGTCAAAGGTGACCTCACCAATCATATTCGCTTTAGTCACAGAGAACAGCCAGTGATATGCGACGTATGCGGGAAGACGTGTCTAAATAGCAATTCTCTCTATGTTCATCAGAAGTTTGCACATTACAAGGCGAAGTACGAGTGTCAGGTATGCAAGAGACGAATGGTGAGCCAGGAGAACTTAAACGAACACATGCTGAGGCAACacgagagaagagagaacgTCGTTTGCGAAGAATGCGGTAAAACTTTCTCAAGGAACAGCAGGTTGAAAGTTCACATGAGAATTCACACTGGGGATAAACCGTACACTTGTACGATCTGCAATAAGTCGTTCGCACGTAGAACGGCGCTGAAGCAACATCTTCTCATTCACACTGGCATTCGACCTTACGTTTGCGACATCTGCGGAAAAGCGTTCACACAGAAGCCTGGACTAATTAGCCATAGAAAATCTCATCCTGGATCTCATCCACCTCTGCCTAGGGTCTTAATCGATCATATATTGAACGACGTTATGAATAATTAA
- Protein Sequence
- MRLWQQIDVNGKLKYMLMPALNETAKSEENSTSLTTLPSIKIEENDDHAEPSVQKTTNEDGNRFVASFAHFCEVAVDCYTCDKCGLKFPLESMLNRHKASHRFCYWLRRKHLNEKYISRLRANVKRPGKGSKVEKQLKKYSCSMCNFTSDKRIGLTLHVRRKHKFSGDKKAPGEFPCVICGVKCKTQAKLKKHMCQHRNTSTMYFKCNKCGFECRRSSVLVSHTIQSHRKAGKTTKQCTRKKFTGAKCHYKSSQREDSNDMNLRDVKKSNPVPSAPPMEFECKKESQVASRVNRKQKKTSEEQCNLCDFKCTTKSTLYSHKRQHKVENISEVYSCNECGFKTSKKSSLYSHIKRKHKVTKSCTGSDQPELFYCNQCDYKNKNKYELKVHVARKHTDDFKFSCETCGKKFKVKGDLTNHIRFSHREQPVICDVCGKTCLNSNSLYVHQKFAHYKAKYECQVCKRRMVSQENLNEHMLRQHERRENVVCEECGKTFSRNSRLKVHMRIHTGDKPYTCTICNKSFARRTALKQHLLIHTGIRPYVCDICGKAFTQKPGLISHRKSHPGSHPPLPRVLIDHILNDVMNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -