Cruf024284.1
Basic Information
- Insect
- Cerceris ruficornis
- Gene Symbol
- -
- Assembly
- GCA_963989415.1
- Location
- OZ022522.1:18412666-18417361[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.027 4.8 9.0 0.1 1 19 4 22 4 24 0.94 2 19 7.9e-05 0.014 17.0 1.0 1 21 42 62 42 63 0.97 3 19 5.6e-05 0.0098 17.5 1.3 2 23 101 122 100 122 0.94 4 19 0.00034 0.059 15.0 2.6 1 23 126 148 126 148 0.97 5 19 6.2e-05 0.011 17.3 0.5 3 23 156 176 155 176 0.98 6 19 4.2e-06 0.00073 21.0 4.4 2 23 183 204 182 204 0.96 7 19 0.71 1.2e+02 4.6 3.7 1 19 213 235 213 237 0.73 8 19 0.6 1.1e+02 4.8 0.2 3 23 243 262 242 262 0.94 9 19 0.043 7.6 8.4 0.7 3 14 270 281 269 284 0.88 10 19 0.024 4.3 9.2 2.2 1 23 367 389 367 389 0.97 11 19 4.1e-06 0.00073 21.0 0.6 2 23 399 421 399 421 0.95 12 19 2.1e-05 0.0037 18.8 4.3 1 23 427 449 427 449 0.98 13 19 0.032 5.7 8.8 0.4 1 23 453 475 453 475 0.97 14 19 4.1e-06 0.00071 21.1 1.5 3 23 483 503 481 503 0.97 15 19 3.9e-05 0.0068 18.0 0.2 1 23 509 531 509 531 0.98 16 19 0.072 13 7.7 0.9 1 23 537 559 537 559 0.97 17 19 6.7e-07 0.00012 23.5 0.2 2 23 566 587 565 587 0.97 18 19 6.2e-07 0.00011 23.6 0.6 1 23 593 615 593 615 0.98 19 19 1.1e-07 1.9e-05 26.0 1.9 1 23 621 643 621 643 0.99
Sequence Information
- Coding Sequence
- ATGGCGTCGCACAAGTGCGGATCTTGCGACGAGGAATTCAATACCGAAGGTGCTTTACTCGTTCACAAAACTGAACAGTCCATTCTAAGAACCAGAGAAGCTTTGCGTAAATCTGAAAAGAGCTACACTTGCGACGTTTGCTCAGAAACATTCACaaaaaaagtacaattatcTCATCATCGAAGAGCTCTCTGCAAGAGCACCAAAATCTCTGACCGGAAGGATAAAAAGTCTAAAGAAAAAGCCGTTAAAGAAAGACGTAAGAAAAGGGAAAATACCAGTACATCGATCAGTCCAGTGGAATGTGATATATGCAAGAAAGTTTTCAAAAAGAAGAAATACTTGAACGTTCACAAAACTCTACACGGTGCTGCTCACATTTGCCACCTGTGCGGTGCAAAATTAACGTCGGAATATTACCTAAAGATCCACATAAGACGGCACAACAAAGAATTCACGGAATTCTGCGAAGTGTGCAACAAAGGATTCTACTTGAAAACGACACTGAGAGCTCATATGAACGTGCACAGTGATTACAAATTGTGCATTTGCGATATCTGTCACAAATCCTTCAGTAGCCGCGTTTACCTGAGGAGTCACATGAAGATTCACATTCAAccggagaaaaggaagaagtaCAAATGTGAAATATGCAAATTCGAGACTTTCTACAGTTACTGTTACAAGGAACATCTTTGGACTCACACTGGAGAACGTCAGGTTGCATGCGAATTCTGCGGGAAGCTTATTAGAAGAGAATATATGAAGATCCACGTTAGAATACACACCGGCGAGAAACCGGAAATATGTGAATTTTGCGGGAAGACGTTTAGTTCGAGGAAGTACCAGGAGATCAATGTCGAGGAAACGAAAATAGAACCGATAGATTCCCTAGAGGGCATGGAATTAGTCAGATACGAAAACGATGTGTGCACTGTCGAAGAGTATCACGAGATCAGCCATCAGGAGATCGTCACGGAGATAATAGAATACACTGACGAAATACCGGAAGTCAAGCTGAAACCAGAGCCCCAAAGGAGGTCAGTCAGAAGGGACATCCGCAGTAAATGCGAAACGAACGGGAAGTGTACGGTTATCTACGAGTGCGACATCTGCAACAAGAGGATGCGAAAGAAGCTTCAGTATCTCAAACACAGGCAAGATCACGAGAGGAATCCTGAAACAATCGGTAATCGTTGCGACGAATGCGATAAGGTGTTCTCCGATGCGGAGAAACTGAAGAAGCACAAGATAAAGGTGCATCAGAAGGAGAAACCTTATCAGTGTCTTCTTTGCGGCAAATGCTTCAAGACCGAGGAATTCTTGAAGACTCATCTGAAGCAACACAATAAACGCTTCACTTGTGATATATGTGGCATCTCAAAGGTATCCGGTTACGACTTACGTCTTCACAAGAAGAAGCACAATCAGGAATACGTGACTCACTGTGAGATCTGTGGCAAGGGATTCTACACTAATCAGACGCTTGAACGACACTTGCTTACCCATACCGGCGAGAAACCGTTTATTTGTAAAGTCTGCAACACTCCGTACGCTAGTGCAGCTTATCTTAATATGCATATGAAGTCtcatggagagagagagaagcataAATGCAATATCTGCAATTTCGAGAGCTACTGGAAGGCTGCGCTGAAGGTCCACTTGAAGATTCACACCGGCGAGAATCAGATCACCTGCGAGGTCTGCGGGAAGTCCGTTTCTAGCAAGACTTATTTACAGATTCATATGCGCATACATTCAGGCGAGAAACCGCATGTTTGCGAGGTCTGCGGGAAGGCTTTCAGTGTACGGAAGTATCTTATTGTTCATCTGAGAACTCACACTGGAGAAAGGCCGTACGAGTGTAAGGTCTGTCAGAAGAGGTTCACTCAACAGGGGTCTCTGAATTCGCACATGAAGTCGCATAACGAGAGAAAGTGA
- Protein Sequence
- MASHKCGSCDEEFNTEGALLVHKTEQSILRTREALRKSEKSYTCDVCSETFTKKVQLSHHRRALCKSTKISDRKDKKSKEKAVKERRKKRENTSTSISPVECDICKKVFKKKKYLNVHKTLHGAAHICHLCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKTTLRAHMNVHSDYKLCICDICHKSFSSRVYLRSHMKIHIQPEKRKKYKCEICKFETFYSYCYKEHLWTHTGERQVACEFCGKLIRREYMKIHVRIHTGEKPEICEFCGKTFSSRKYQEINVEETKIEPIDSLEGMELVRYENDVCTVEEYHEISHQEIVTEIIEYTDEIPEVKLKPEPQRRSVRRDIRSKCETNGKCTVIYECDICNKRMRKKLQYLKHRQDHERNPETIGNRCDECDKVFSDAEKLKKHKIKVHQKEKPYQCLLCGKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNQEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFICKVCNTPYASAAYLNMHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -