Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_963989415.1
Location
OZ022525.1:20255751-20259491[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.6e-14 2.4e-11 44.7 0.2 3 44 641 682 639 684 0.95

Sequence Information

Coding Sequence
ATGCTTGCACTAGGACCAAAAAAAGACGGCGGTCCCAATACAAAGTTCTTTGAGTGTCAGGAGACCCTTACACAACTAGATGGAGTTAAACAGTggcttttaaaaaattgcaagaagTATGTGCAAACAGATCCACCCACTAACAAGAGTTTAGCCACTTTGATAGTGCAGTTGTTGCAGTTTCAAGAGGACAATCTaggaaaaaatgtttccaaacCGCCGATGACCAGACTTCCTatgaaatgtttcttagacttcaaACCCGGGGGTGGCCTGTGTCATATATTGGCTACGGCGTATCGATTTAAACAGGAACAAGGATGGCGCAGATTCGATTTCCCCGTTGGGAAGGCAGGATCGCGCATGGATCGAACGGTAGAAATGCTCATGGCGGCGGAACGTGCTTTGATTCAAAACCGTTGTATTACCATACCCAGCATATACGTCAGGGCCGACGTAGACAAGCCGACGGCTGCAAAAGTAAAGGAAGCCATCAGACGACATCAAGGCACCGTCGCCGAGAACGAAACGGACGCTACGCACATTATTTATCCTCCGGTGGATCCCATGGAGGAGGAATACGCGCGCCCGTGTATCAGACGCGATAGATCCGTTCTTCTTCATTGGTACTATTTTCCCGACAGTTACGATTCCTGGACGTCCTTGGATCTTCCGTGGGATTTTCCCGAGGGGGGCATCGCGAGTACAAACGTAAGATCGATTTATAAAGTATCGGCGACATGGGCTCTGGATTTAGATCAGTACAACGAGTGGATGAACGAGGAGGACTATGAAATAGATGAAAATGGTCAGAAGAAGATACACAAATACAGACTTTCGGTCGAAGATCTAATGGCTCAGCCTGCTCATCCACCACCCGCCAAGAAGCCAAAGAGAAAAAGATCACCCAGTCCACCCCCAAAACTCGGAAAACGCAAGAGCGCGAGAGCCCCATCCGGTGTACAAAGTGCCTCGTCGGCATCGTCGCTTACGGCACCGAAAAAGTCTAGGGGTGgcggagaggaagaggaagatctGACGCAAGGAATGGAAGACCCTCCGGCGGAACCTCGAATCGTCGAAGTAGTCGCTACTCCTACGAATCCGCCTATTGCAGGCCAAGGCAATTCGACAACGGCAGGCACGAATTTAGCGACAACCGGAAGTAAGAAACAGGATAACGAGTTGCAACCACTGAAATCCGGTAATATGGCGGATTTGGATGAGCCGATGGAGGTGGACAAAGGAAGCTCTCAGGGTACTCAGGACAGAGAGGAGCGGGACGTGagtaaagagagaggagagggtaACAAAGGAGACGAACCGGAAGACAACGTCACGGAACAGACGCATCACATCGTCGTTCCCAGTTATTCGGCTTGGTTCGATTACAATTCAATCCATACTATCGAGAAGAGAGCTTTGTCGGAATTTTTTAACGGTAAAAACAAATCGAAAACACCGGAGATTTATCTGGCATATAGAAACTTTATGATCGATACCTACCGACTAAATCCCACGGAGTACATCACATCGACTGCATGCAGGCGCAATTTAGCGGGTGATGTTTGCGCAATAATGCGCGTTCACGCGTTCCTGGAACAGTGGGGTCTTATAAATTATCAGGTAGACGCGGAATCTAGACCGACGCCAATGGGACCTCCACCGACCTCGCACTTTCACGTACTATCGGACACTCCTTCTGGCTTGGCTCCTGTCAATCCTAACCCACCAAAAACACCGCAGCCGTCGGCCGCGAAGACTCTTTTGGACTTGGAAAAGAAGTCGAGTATACCGACTGTAATAGGGACGGACGAGAAACCTCCGACCGGAGCAATGGCAAACTTCGGATTAAAGATCGACCAGTACTCTAGAAAGCCGACGgtattgaagaacaaacaagcgGCTGGTGCTACTCGCGATTGGACGGAACAGGAAACGTTGTTACTGTTGGAAGGCTTGGAGTTACATAAAGACGATTGGAATAAAGTTTGCGAGCACGTTGGCTCGAGAACGCAGGACGAATGCATACTGCACTTCCTGCGGCTCCCTATAGAAGATCCGTATTTAGAGGAGGGCGGTCCGGAAGGTTTGGGACCGTTGGCCTATCAGCCTGTACCATTTTCCAAAGCTGGAAATCCGGTTATGAGTACCGTCGCCTTTTTGGCTTCGGTCGTCGATCCAAGAGTAGCGGCCAGTGCCGCAAAAGCCGCTATGGAAGAGTTCGCGGCTATAAAGGATCAAGTGCCTGCCGCTTTGCTCGATCAACATTTGAGAAACGTTCAGGCTAGTGCCAATCTGGACGGTAAGTTCGACCCAGCCGCGGGTCTGGCACAGTCGGGCATCGCCGGTACGGGGCCGCCCGAGCCACCCGACGACACACCGTCTCCTTCGACCACGGCAACCACCGTGCAACCTACCACTGCCACGTCTCCTCATTCCACCGCCCCTACTACCCCCATGGAGACGAAGAAGGAGGAACAGGACAAATCTAAAGATGCATCCGACGCCGAGGAGACCCAGCTCGATATCACGAAAAAGGAGGACGAGTTGAAGGAGACCGAGGAAGATGCAAAATCTTCCACGGATCCCGAAGCAATGGAAGCGAAAGAGAAGAAGGACAAGGTCGTACGAGACGCTCAACTTCAGTCCGCGGCTGCCGCGGCACTCGCAGCTGCGGCCGTCAAGGCAAAACACTTGGCAGCCGTTGAGGAAAGGAAGATCAAGTCTTTGGTGGCGTTGCTCGTCGAAACTCAAATGAAAAAACTGGAAATCAAATTACGACACTTTGAGGAACTGGAAACTACGATGGAACGCGAACGCGAGGGCTTGGAGTATCAGAGGCAGCAACTCATTACCGAGAGACAGCAATTCCATCTGGAGCAATTGAAGGCAGCGGAATTTAGGGCAAGGCAGCAGGCGCATCAACGACTGGCACaggagcaacagcagcaacagcaacaacaacaacagaaTCAACATCCACCTTGGCAACCAGCCGctcaacagcagcaacagcaacaacagcagcagcaacagcagcagcagcagcagcagcaacagcaacagcagcaacaacagcagcagcagcaaccacCGAGTCCTCAAGGTCCTACGCAGCAACCACCACCCCACACACCGCCTCAACAGGCATAA
Protein Sequence
MLALGPKKDGGPNTKFFECQETLTQLDGVKQWLLKNCKKYVQTDPPTNKSLATLIVQLLQFQEDNLGKNVSKPPMTRLPMKCFLDFKPGGGLCHILATAYRFKQEQGWRRFDFPVGKAGSRMDRTVEMLMAAERALIQNRCITIPSIYVRADVDKPTAAKVKEAIRRHQGTVAENETDATHIIYPPVDPMEEEYARPCIRRDRSVLLHWYYFPDSYDSWTSLDLPWDFPEGGIASTNVRSIYKVSATWALDLDQYNEWMNEEDYEIDENGQKKIHKYRLSVEDLMAQPAHPPPAKKPKRKRSPSPPPKLGKRKSARAPSGVQSASSASSLTAPKKSRGGGEEEEDLTQGMEDPPAEPRIVEVVATPTNPPIAGQGNSTTAGTNLATTGSKKQDNELQPLKSGNMADLDEPMEVDKGSSQGTQDREERDVSKERGEGNKGDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKTLLDLEKKSSIPTVIGTDEKPPTGAMANFGLKIDQYSRKPTVLKNKQAAGATRDWTEQETLLLLEGLELHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEGGPEGLGPLAYQPVPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANLDGKFDPAAGLAQSGIAGTGPPEPPDDTPSPSTTATTVQPTTATSPHSTAPTTPMETKKEEQDKSKDASDAEETQLDITKKEDELKETEEDAKSSTDPEAMEAKEKKDKVVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLAQEQQQQQQQQQQNQHPPWQPAAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPPSPQGPTQQPPPHTPPQQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01473111;
90% Identity
-
80% Identity
-