Basic Information

Gene Symbol
ct
Assembly
GCA_963989415.1
Location
OZ022523.1:15088471-15107754[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.8e-27 1.2e-23 84.0 0.0 2 72 512 583 511 588 0.95
2 3 3.1e-32 2.1e-28 99.3 0.0 2 77 921 997 920 999 0.96
3 3 9.8e-31 6.9e-27 94.5 0.0 3 75 1153 1226 1151 1230 0.95

Sequence Information

Coding Sequence
ATGCGATTAACGATAATATCGAGACGGCAACGGAGAAACGCGGAATCTATAATTAAGATCAGCCAGCTGGTCGAAGAGGTGTCCAGGTTACAGCAGAGCCTGCAGCGCCTTCAGGAGACGAGCGCACAGGCGACAGCGCGCCTCGAGGAGGAGCTCGAAGCGCGCAGGCAACACATCACCAGACTCGAGAGTAAATTGGAACGGCAGAGAGACTATGACGACCTGAAGCGCGAGATCAACGTGCTAAGGTCGGTCGATCTCTCGCAAATCCCGACTGGCGAGCCTGGAAAGAGTTTGGAGCACCTTCTTATGGAACGCTCGAAAGCGCTCCAGCAGACCGAAAGCCTGAAACCATCCAACACGCCAGACGCACTCGGTGGACTATCGTCACCCCTGCAGCGCGCCTCGACCGCCTCGCCTCACGGGGTCGGGGGTGTGCCACCTTCGTCCCACGTACCCTCCCAGCAACCACCGCCGCCGCCCCCAGCAGCAGTATCCCTACCTCCGCGTTCCACACCCACACCTTCTTCGGCCACTTCTACGACCTCCAGTCTCCTCTTCCCGCCTCCGCTCCAAAACGTCGAGACCTTCGGCTCCTTCCTCGGCGAGGAGATCGTCGCCAACTGGAGGCGGACGTTGGAGAGGTCCATCATGaatcagcagcagcaacagcaacaacagcagcaacaacagcagcaacagcagcagcaacagcagcagcaacagcaacagcaacagcagcaacagccgCAGCAACATCCGCAGCAACATCCGCAGCAACAGCATcctcaacagcaacagcagcaaccaCAGCACCCACAGCATCCACAGCATCCACAGCATCCACAGCACCAACAAcaccaacagcagcagcaacaactgCTACCGACTCCACTCAACCAACTTtcccagcagcagcaacaacagctgCAGCAAGCCCAACCGCTCATCGGTCTACATCCACCGACGACACCGAGCAGTCTCAATCATCTTCCATCGCCGACAGATCCATCCTCGAGCTCGAACACCCCGGCCAAGTCGAATACGCCTCTTGGTTCGACGCCTCTGGGCTGTCTCGACGCAGCCGAGAAGGCTCCCACACCTGTCTCCGGACACGAAACACCCGCACCGCCGACACCTTCCTCAACGACCGCTTTGACCTCGCCTCCGAGCTTTCAGCCGCCCACGTCAATGATCGAAACGACCACCTCCTCGGCGTCCATCAACGGCGGAGGCGTTCCGACTGGCGTGTCGGCCGCACCACCGCCGAAGAGTCCGGCCGATCAGGAATCCTgccacaacaacaacaacaacagccaTCATCTGGCGAACAACAACATCGGTGGCTTGAGCGTTCTGGATACGTTGAAGAGCCCGTTTCGTTTCGACGATCGTACGCATCCGTTTAGATTCGGCGATGAATTCGGCGCTGCTGGCATGGCCGGAAGACTCGGCGAGTCCCTCATTCCAAAAGGCGATCCCATGGAGGCGAGGCTTCAGGAGATGCTGCGATACAACATGGACAAGTACGCCTCGCAGAATCTCGACACTTTGCACATAGCGAGGAGAGTAAGGGAGTTGTTGTCGATACACAACATCGGTCAGAGACTGTTCGCGAAATACGTACTGGGACTTAGTCAGGGTACCGTGAGTGAATTGTTGAGCAAACCGAAGCCATGGGACAAGCTCACGGAGAAGGGACGGGACAGCTACAGGAAGATGCACGGTTGGGCTTGCGACGACAACGCTGTAATGCTGCTCAAGTCCTTGATACCCAAGAAAGAGTATGTTTCAGGCAAGGAGCAGGGAATGCCAGCATTCGCCCGCGGACCACAGGATGGTGGTCCGCCGGAAATGAGTGACGAAAGGTTGGCACACATCCTCTCGGAGTCTGGCCACCTGCAAATGAGAGGCGAGCACGAGATTTCGAACGACGCCGACAGCAAAAGTCCAAGCAGAATCGGCTGTCCGAGTCCGTTCAGCAAGGACAGACTCGATAGTCAAAATAGGAGACTGAAGAAATACGAGAACGATGACATTCCGCAGGAGAAGGTGGTGAGGATTTATCAGGAAGAGCTGGCCAAACTTATGGGAAGGAGGGTCGATGATCTTCGCGGGCCACGGGAGTTTCCCCCTAGCGCGTTGTTTCCCCATTTTTTCAGTGGCGCACAGGGTGGCCTCCAGGGTATAGAACGTACGCAGGAAGACATTCGATTAGCATTGGACGCTTATCATCGTGAATTGCAAAAGCTGAATACGACGCCAGGACAGAATCCTTCGTTACCGGGATTGCCAGGGCTTCCTGGTCTCCCGAGTTTGCTGGCACTTCAGCAGCAGGCTCTTCAGCAACATCATCTGGCAACGAATGGCGGGGGCGTGCAAGATCTGAGCCTGGGAAAAGTAGATCCAAGAAACAAAATGATCAACGGCGTGTCTgaagaggagaaggaaaaaATGGAGGAGGCTATGAGACACGCCGGTAGCGCTTTCTCGTTGGTGAGGCCAAAGCAAGAATCCACGGGGCCTCAATCGACTCCTGGTGGATCGAGCGCGAGTTCGCCCCTCGGTAATTCCATTCTTCCTCCGGCGATGACACCGAGCGAGGAATTTTCCGGTGCAGCGGCGGCCAGTCCTTTGCAAAGGATGGCTTCCATCACCAATAGTCTGATCAGTCAACCGTCCACGCCCACTCATCATTCGGCTAATCAAAGACCTCTCAAAGCTGTACTTCCGCCGATTACACAACAGCAGTTCGATATGTATAATAATCTCAATACGGAGGACATCGTGAAGAGGGTGAAGGAACAACTGTCGCAGTACTCCATATCTCAACGTTTATTCGGTGAATCGGTGCTGGGCCTGTCTCAGGGATCGGTTTCAGATCTTCTGGCACGTCCAAAGCCCTGGCACATGCTGACGCAGAAAGGACGTGAACCGTTCATCAGGATGAAGATGTTCCTGGAGGATGACAACGCGGTGCACAAGTTGGTGGCCAGTCAATACAAGATCGCACCGGAGAAGCTGATGAGGACCGGCGGCTACGGCGGCCTGCCTCGTAAGTTTAACTCAGCATGCGGAACACCGATGAAGCCTATGCCCCCGACGAAGTTGGTCCAGGAACAGCTGCAGAATGCTGCGAAAGCTCAAGCCGCGGCGCAAGCAGCGGCTCAAGCAGCGGCGCAACATCAACAGGAGAATCAAATGCAACTCGGTCCGCCTCAACAGAGTCCACAACTTCCCCAGCATCCTCAGCCGCCTCCGCCGATGATGTTGACGCCTCCGGGTCCTCATCATCCTCACACGCAGCTCAGTATGCAGGAACTCCAGAagaagcagcagcagcagcagcaacaacagctgACCTTGCATTCGCCGCATCATCAGATGGCTCCTTCGCCTCTGCGAGGACTTCACCCCCATATCTCGCCGAGTGTCTACGAAATGGCTGCACTGACGCAAGACCTTGATACTCAGACCATTACCACGAAGATCAAGGAGGCACTCCTGGCGCACAACATCGGCCAGAAGATCTTCGGCGAGGCTGTACTCGGCCTGTCTCAGGGCTCGGTCAGTGAACTGTTGAGCAAACCGAAACCATGGCACATGCTCAGCATAAAGGGCCGAGAACCGTTCATCAGGATGCAACTGTGGCTCTCCGATGCCCACAACGTCGATCGACTGCAGGCGCTAAAGAACGAGCGAAGAGAGGCCAACAAGAGACGGCGTAGCAGTGGACCGGGCCATGATAACAGTTCAGACACCTCGAGCAACGACACCGCGGAGTTCTATCACGCGGCCTCACCTGGTCCTGGTCCGGCATCGGCCAAGAAGCAACGAGTTCTCTTCTCCGAGGAGCAGAAGGAAGCCCTCAGGCTCGCCTTTGCTCTCGATCCGTACCCTAACGTCGCGACTATCGAATTCCTCGCCGGCGAGCTCGCCCTCTCGTCGAGAACGATAACCAATTGGTTTCACAATCATCGAATGAGACTGAAACAACAAACGCCGCACGGCCAACCGGAGCCGCAATCTCCGCGGGAACCTGGCCAACCTTTCGACCCGGTTCAGTTTAGATTGCTGTTAAACCAAAGACTGTTGGAGATACAGAaggagaggttgggcctgggaAACGTGCCTCTACCTTATTCTCCGTACTTCAATCCTAACTTAGCTGCCCTGGTAGGAAACGCCCTCAAGGAGCAGTGTTCCGGTCTCGATTTATCGATGAACGCCCTTAAAAGGGAACCTAACCCCGAGTTCGAGGACGAAGACGTCGAGGATGCGATGAGTAACCTAGGTAGCGAGGATTCCGAGGGATCGGCGGGTAGTATAAAGAGAGAGCCCGCGGAAACGCCGACAGCACCGACGACCGTTAGGTCGAACAGAAGAAAACCAGCCGCACCTCAATGGGTCAATCCCGAGTGGCAGGAGCCAGCGAGAACGGGCGACGAGGTGATCATAAACGGTGTCTGCGTGATGCAGACGGACGATTACGGAGTGAAGAGGGAGGCCGAGGAGACCATAAGGGTCGAACCTACCCCGGTGCAGGATAGATACGAGGAGGACGCGCAAAGCGACGTTTCCTCCGTGTCCGGTAACAACGGCCAGGATCGTGACAGTCCTCTGCCGAGTCCAAAGTCCGGTCAGAATAGTCCAGCGGCATCGCCAAGACCGCCCTCGACGCAACAGACTCAACAGTCGACGGACGAGAGCCCCAAAGACACCGTAGTGAAACACGAGCCAGAAGAGACGTGGGATTACTAG
Protein Sequence
MRLTIISRRQRRNAESIIKISQLVEEVSRLQQSLQRLQETSAQATARLEEELEARRQHITRLESKLERQRDYDDLKREINVLRSVDLSQIPTGEPGKSLEHLLMERSKALQQTESLKPSNTPDALGGLSSPLQRASTASPHGVGGVPPSSHVPSQQPPPPPPAAVSLPPRSTPTPSSATSTTSSLLFPPPLQNVETFGSFLGEEIVANWRRTLERSIMNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQHPQQHPQQQHPQQQQQQPQHPQHPQHPQHPQHQQHQQQQQQLLPTPLNQLSQQQQQQLQQAQPLIGLHPPTTPSSLNHLPSPTDPSSSSNTPAKSNTPLGSTPLGCLDAAEKAPTPVSGHETPAPPTPSSTTALTSPPSFQPPTSMIETTTSSASINGGGVPTGVSAAPPPKSPADQESCHNNNNNSHHLANNNIGGLSVLDTLKSPFRFDDRTHPFRFGDEFGAAGMAGRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHGWACDDNAVMLLKSLIPKKEYVSGKEQGMPAFARGPQDGGPPEMSDERLAHILSESGHLQMRGEHEISNDADSKSPSRIGCPSPFSKDRLDSQNRRLKKYENDDIPQEKVVRIYQEELAKLMGRRVDDLRGPREFPPSALFPHFFSGAQGGLQGIERTQEDIRLALDAYHRELQKLNTTPGQNPSLPGLPGLPGLPSLLALQQQALQQHHLATNGGGVQDLSLGKVDPRNKMINGVSEEEKEKMEEAMRHAGSAFSLVRPKQESTGPQSTPGGSSASSPLGNSILPPAMTPSEEFSGAAAASPLQRMASITNSLISQPSTPTHHSANQRPLKAVLPPITQQQFDMYNNLNTEDIVKRVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGLPRKFNSACGTPMKPMPPTKLVQEQLQNAAKAQAAAQAAAQAAAQHQQENQMQLGPPQQSPQLPQHPQPPPPMMLTPPGPHHPHTQLSMQELQKKQQQQQQQQLTLHSPHHQMAPSPLRGLHPHISPSVYEMAALTQDLDTQTITTKIKEALLAHNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNVDRLQALKNERREANKRRRSSGPGHDNSSDTSSNDTAEFYHAASPGPGPASAKKQRVLFSEEQKEALRLAFALDPYPNVATIEFLAGELALSSRTITNWFHNHRMRLKQQTPHGQPEPQSPREPGQPFDPVQFRLLLNQRLLEIQKERLGLGNVPLPYSPYFNPNLAALVGNALKEQCSGLDLSMNALKREPNPEFEDEDVEDAMSNLGSEDSEGSAGSIKREPAETPTAPTTVRSNRRKPAAPQWVNPEWQEPARTGDEVIINGVCVMQTDDYGVKREAEETIRVEPTPVQDRYEEDAQSDVSSVSGNNGQDRDSPLPSPKSGQNSPAASPRPPSTQQTQQSTDESPKDTVVKHEPEETWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01394913;
90% Identity
iTF_00982081;
80% Identity
iTF_00306136;