Csol000039.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- -
- Assembly
- GCA_000503995.1
- Location
- NW:1108634-1113194[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.52 31 4.4 0.3 1 23 76 99 76 99 0.96 2 11 0.016 0.99 9.1 0.3 1 23 135 158 135 158 0.95 3 11 0.03 1.8 8.3 1.6 1 23 269 292 269 292 0.94 4 11 0.0056 0.34 10.6 4.5 1 23 322 345 322 345 0.95 5 11 0.039 2.4 7.9 4.1 3 23 364 385 362 385 0.95 6 11 3.6e-06 0.00021 20.6 4.4 1 23 391 414 391 414 0.96 7 11 1.2e-05 0.0007 19.0 0.9 2 23 420 442 419 442 0.96 8 11 0.00098 0.059 12.9 0.4 1 23 447 470 447 470 0.97 9 11 3e-06 0.00018 20.8 0.5 1 23 476 498 476 498 0.98 10 11 2.1e-05 0.0013 18.2 2.7 1 23 504 526 504 526 0.96 11 11 1.1e-05 0.00067 19.1 1.2 1 23 532 554 532 554 0.97
Sequence Information
- Coding Sequence
- ATGGACCAGGAGAGCGATTATACAGACTGCATACAATACGGGCCTCTACAGACAATCGACGAGGACACTTTATACGATACCATTGTGCCTACGATAAGTAATTTAACGAAATCCGAAATTCTTGACGTACCTAATTTTATCGACGATTTCGAGGAGGTTTCGATCGACGGACGCTCGTCGACGTCTGTCCCGATAACCGACATCGACAGCTCAACGGAGACACTATTTACATGTAAACCCTGCAAAATCTATTTCCCGATAGAAGATATGTTTGACAAGCACATGAGTATGGTCCACAGAAGAGATATGTTGCCGgtggagagaaagagaagaaaaacgaAAAGTATCCTTGAGCGACTGAAGGAGAAAGCTGGTGGTTATCGTAAGAATAAGCACGAGCTGTATGTGTGTAATTATTGCTCGTACGCATCGAATGTTCAGTCGCAAGTGTCTTCGCACGTGGCGCGTAAACACGGAAATATCAGAAAATCTGTTGCCGTCCGCACGCAAACAGTTACCGTGGCAATCGAGCCTGCACATTTGGATGTAAAGGATGAGCCCTTGGAAATGGTGGATGATGAATCGAAAGACGAAATCGCACTGCTGAAAGAGGATGAAGAAATATTCGACTCGGACGTGGCAATTATGACCGAGGAGATCGAAGAACTGGATGAGAAGGATGTAGGAATTATCGACGAAGACGATATAGAAATTCATACGGACGTGGAATTTCTCAATGTCGACGATTACGACATCCTGCTGGACCAACATGATAAACCAGCGACTATCccgaaaagaaaattgtacaatTGCCCGCACTGCGAGTTCCAAGCGACGAGGAGATCATTCATGAACGCGCACTTGACTCAAGAGCACAATAGCGAATGGAAAGAAGCTGTGAGCCAGCAAGATAATTCGGCGAGCAACGAGATTACCAAGCAATACGTACCGGCAATTCGCAATCACGCCTGCTATTACTGCCATTTCGCTGCCACGACGAGATCTACCTTGAACGCTCACACCCGCCGGAAACACCCCGGCTACCTCCAGCCAATTAAATCCCGCAAGCAGCCGCCCATGGAGATGCACTGCGACGAGTGCGATTTTTCAACCACCGATCGTCACAAGATGCAGATGCACATCGAGCGCAAACACGTGACCGAGTGCCGCTACACTTGCGAGTACTGTGGCAAGAAGTTCAAAGTCAAATGCGACCTCACCTCCCACATACGCTTCCAACATTTCAGGACACCAACCGTGTGCGACGTGTGCGGCAAGATCTGCAGCAACAGCAATGCCCTGCGAGTGCATCAGAAGCGCGAGCACTATAAGCCCGACTTCGAGTGCAGCATATGTAAAAGACGAATGGTATCGCAGGAGAATCTTGACGAGCACATCCAGCGTCAGCACGAGCAGAGAACGAAATTCATCTGCGAGCAGTGTGGCAAGATCTTCGATCAGCAGAACAAGCTGAGGCAGCACGCGATGACGCACACGGGGGAGCGACCGCACAATTGCCACGTGTGCGGCAAATCGTTCGCGAGAAGGGCCGTATTTCGGCAGCATTTGCTCATCCACACGGGCCAAAGACCATACGTATGCGACATTTGCGGCAAGAGCTTTACCCAGAAGCCGGGGCTTATTTGCCATAGAAAGATGCATCCAGGTGATAAGCCACCGCTGCCCGTCGTTTATATTGATCATATATTAGATAAGTTTGTGCAGAAAACggacgacaacaacgacattTAA
- Protein Sequence
- MDQESDYTDCIQYGPLQTIDEDTLYDTIVPTISNLTKSEILDVPNFIDDFEEVSIDGRSSTSVPITDIDSSTETLFTCKPCKIYFPIEDMFDKHMSMVHRRDMLPVERKRRKTKSILERLKEKAGGYRKNKHELYVCNYCSYASNVQSQVSSHVARKHGNIRKSVAVRTQTVTVAIEPAHLDVKDEPLEMVDDESKDEIALLKEDEEIFDSDVAIMTEEIEELDEKDVGIIDEDDIEIHTDVEFLNVDDYDILLDQHDKPATIPKRKLYNCPHCEFQATRRSFMNAHLTQEHNSEWKEAVSQQDNSASNEITKQYVPAIRNHACYYCHFAATTRSTLNAHTRRKHPGYLQPIKSRKQPPMEMHCDECDFSTTDRHKMQMHIERKHVTECRYTCEYCGKKFKVKCDLTSHIRFQHFRTPTVCDVCGKICSNSNALRVHQKREHYKPDFECSICKRRMVSQENLDEHIQRQHEQRTKFICEQCGKIFDQQNKLRQHAMTHTGERPHNCHVCGKSFARRAVFRQHLLIHTGQRPYVCDICGKSFTQKPGLICHRKMHPGDKPPLPVVYIDHILDKFVQKTDDNNDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -