Basic Information

Insect: Ceratosolen solmsi
Gene Symbol: -
Assembly: GCA_000503995.1
Location: NW:2027805-2033469[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 8.7e-05 0.0052 16.3 2.3 2 23 478 500 477 500 0.95

2 7 2e-07 1.2e-05 24.5 0.8 1 23 511 533 511 533 0.98

3 7 2.5e-06 0.00015 21.1 2.4 1 23 539 561 539 561 0.98

4 7 4.8e-05 0.0029 17.1 0.4 3 23 570 590 568 590 0.92

5 7 0.00053 0.032 13.8 6.2 1 23 598 620 598 620 0.97

6 7 2.3e-07 1.4e-05 24.3 0.3 1 23 626 648 626 648 0.97

7 7 2.9e-06 0.00017 20.9 0.6 2 23 659 681 658 681 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	8.7e-05	0.0052	16.3	2.3	2	23	478	500	477	500	0.95
2	7	2e-07	1.2e-05	24.5	0.8	1	23	511	533	511	533	0.98
3	7	2.5e-06	0.00015	21.1	2.4	1	23	539	561	539	561	0.98
4	7	4.8e-05	0.0029	17.1	0.4	3	23	570	590	568	590	0.92
5	7	0.00053	0.032	13.8	6.2	1	23	598	620	598	620	0.97
6	7	2.3e-07	1.4e-05	24.3	0.3	1	23	626	648	626	648	0.97
7	7	2.9e-06	0.00017	20.9	0.6	2	23	659	681	658	681	0.95

Sequence Information

Coding Sequence: ATGGAGGATAGCGCAAATGTAACAAAGATGTTGGAAGAAGTGGTCGATGGACAAGAGATTATTTTGGagcaggaggaggaggaggaagaggaggaggaggaggaggaggaggaggaggaggaggaggaggtggatcAGGAGTGCGAAGATGGTGAGATAGAGGAGATCGTAGAAATTATCGAAGAGATAGAGGAGATCGACGATGGGACGGATGATGTAGAAGAGATCGAGGATATAGAACATgtagaggaagaggaggaggaggagatccAAGAGGTTCAGGAGCTTCAGGTGGTTCAGGAGATTCAGGAGGTTCAGGAGGTTCAGGAGGTTCAGGAGGTTCAGGAGGTGCAGGAGGTTCAGGAGGTGCAGGAAGTTCAAGAGGTTCAGGAGGTCGAGGAGGAGCATTTTTTGCAAAAGACTAATGGCTTGTACGTGCCTCAAGAAAGTAGCTGTGACTCTAAGGAAAAGcAAATTGTATATATCAGCAACCAGAAACCTACCGTTAATCAAGAAAAACCCACCGGTCATATTCGTTACGATGCATCAGCCGATTGGGAAGACGAGGAATACGACCAAGAACAGAATTCTATAGAACCCGTGGAAGATGCAGTGGCAAATTCTGGTGAAATGAATACTTACGCTGCATATAGTAACGGAGTGAATacggaaataataaatgtaaacgaAAGAACAGAAATTTCTAGGACACAGCTAAATTATGAACATAGTGTAAATCAAGATAATAGTGTAGATGAAGATAACAATCAGNNTGTCCAAGCATCTGAAAACAATCTAGTTTATACGGTGCTTGGCTCTAAAAAGCACATTAGATCAATGGATGAAAGTAGATCTGATGTTGAATATGTCGAGATACAAAGGTATAGAGATGATAGTTTGCCCGACGATGGAACTATTTACTACGCTGTAAACGATGGCGACGGTACATATGTTCACGCAATGGAAGAGGATGACCAACAATATCAGTACGTTAACGAAGAACCTATGGACCAAGATAATCAGGAATGGGAGGAATCCAATCAAACCGCGGAGGATCAGCAGGAGGAACAGACGGAACAAGATCAAATCTTCTTGCACGAAGATTCAGACGGGcagttgtattttaaaaacgaatACGGACAATTGCAACCAGTTTACATGACTCCCGATGGAAATTATGCAATAGCGGAAAACAGTAGCGACGAGCAGGATAGCCAGGGAGGAGATCTTAATCAAATACAAGAGGAGCAGGCGGAAACGGATAGTTACATAATTCCGGAGCTTGACGTTAAGCAATTTAACTCGAAAAAGATCGATCAGAGTCAAGAGCCTGACAACGACGACAGCACTGTAACAATATCACTGATTATATCGGAAGATGAAAACGGACAAAAGCGAACTCAAGTCATAATACCGACTCCAGCCGAGTCAAAATGCGACATCTGCAGCAAGACGTTCAAAACGTCCTTGCAATTACTTAAGCACAATCGCTTGAAGCACGCGAGGGAAGAAGACATTACAACGAGAAACTTCCCTTGCGATATGTGCCCTAAAAGATTTTCCGATCAAAATTCCTTGGCTCGTCATCGAAAGACTCACACCGAAAGTCGACTATTTCAGTGTTTGGAATGTCACAAATCCTTCCCCACGGCCAATACACTGAGGAAACATTTGTCAATGCATAATCCGGATTCTCTTCCATTGCCTTGCATTTATTGCGGGCGTCGATTTTCCGATAAAGTCAGTCTTACAAAACACGAGCAGTCGCATTTAGCTGGGGAAAAGCGAACGCACGTTTGTGACATTTGCCAAAAGTGTTTCTCGAACATCACGGACTTGAATATCCATAAAAAGCATCACGATCCAGATAGGAAATTCGACTGCGGTGTCTGCGGACGAGAATtcaatcgattaaataatctaCAACGCCACATGATGGTACATCAACAGCAAGAAGCAAACGAAGAGATTCTCTCCTGTAATGTTTGTGGTATAACGTACAAATTTTCAAGCTCTTTGACTAGACATATGGTTACGACGCATATGAATCCTGAAAAGCTTCGGCAGCAAGCCGAAGAACAAAGGAGGAAgcgtgaaaataattatcgccGTTACTTAGAAAATCGTAAAACCTTCGAAAATCAACAACCAAAACGTGCTTATCGTCGCTCAATGGGCAGATTAATGGATGACGAAGAAGACGAGGCTGATTGA
Protein Sequence: MEDSANVTKMLEEVVDGQEIILEQEEEEEEEEEEEEEEEEEEEVDQECEDGEIEEIVEIIEEIEEIDDGTDDVEEIEDIEHVEEEEEEEIQEVQELQVVQEIQEVQEVQEVQEVQEVQEVQEVQEVQEVQEVEEEHFLQKTNGLYVPQESSCDSKEKQIVYISNQKPTVNQEKPTGHIRYDASADWEDEEYDQEQNSIEPVEDAVANSGEMNTYAAYSNGVNTEIINVNERTEISRTQLNYEHSVNQDNSVDEDNNQXVQASENNLVYTVLGSKKHIRSMDESRSDVEYVEIQRYRDDSLPDDGTIYYAVNDGDGTYVHAMEEDDQQYQYVNEEPMDQDNQEWEESNQTAEDQQEEQTEQDQIFLHEDSDGQLYFKNEYGQLQPVYMTPDGNYAIAENSSDEQDSQGGDLNQIQEEQAETDSYIIPELDVKQFNSKKIDQSQEPDNDDSTVTISLIISEDENGQKRTQVIIPTPAESKCDICSKTFKTSLQLLKHNRLKHAREEDITTRNFPCDMCPKRFSDQNSLARHRKTHTESRLFQCLECHKSFPTANTLRKHLSMHNPDSLPLPCIYCGRRFSDKVSLTKHEQSHLAGEKRTHVCDICQKCFSNITDLNIHKKHHDPDRKFDCGVCGREFNRLNNLQRHMMVHQQQEANEEILSCNVCGITYKFSSSLTRHMVTTHMNPEKLRQQAEEQRRKRENNYRRYLENRKTFENQQPKRAYRRSMGRLMDDEEDEAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00304619;
90% Identity: -
80% Identity: -