Csol009151.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- -
- Assembly
- GCA_000503995.1
- Location
- NW:1265876-1268783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.7 1.1e+02 2.7 0.2 2 20 119 136 118 138 0.83 2 14 9.5e-05 0.0057 16.1 0.1 1 20 144 163 144 164 0.95 3 14 0.0016 0.097 12.3 0.7 1 23 172 195 172 195 0.90 4 14 3.9e-06 0.00024 20.5 0.9 1 23 201 223 201 223 0.98 5 14 3.9e-06 0.00024 20.5 0.3 1 23 364 386 364 386 0.98 6 14 0.0014 0.087 12.4 0.1 2 20 396 414 395 416 0.93 7 14 0.0002 0.012 15.1 2.6 1 20 438 457 438 460 0.92 8 14 0.0014 0.086 12.4 0.5 1 23 465 488 465 488 0.95 9 14 6.6e-07 4e-05 22.9 0.3 1 23 494 516 494 516 0.99 10 14 0.0014 0.085 12.5 6.3 1 23 523 545 523 545 0.98 11 14 0.00024 0.014 14.9 0.4 3 23 553 573 551 573 0.97 12 14 0.00026 0.016 14.7 0.3 1 23 579 602 579 602 0.96 13 14 0.092 5.6 6.7 0.3 1 23 616 638 616 638 0.97 14 14 0.034 2 8.1 0.1 2 23 875 896 874 896 0.94
Sequence Information
- Coding Sequence
- ATGGAGACAAATGAAAATGAGCGGtatgtttcattttctttaaacagTGTACATGAagGTGTTCAAGATAATATTTCTCATGAAGAGATATGTGAACCAATTAATGATTGTGTCCTACAAGATAGTATAAATGAGGTTTCAATTGATGATATAAATCATGATATTACAGAAACTGAAGTTGCGGTAGAAATTTTAACAGAAAATTCTGGAGATGAAGAGGAAAATTCAGTTGTATatcctatttatattaaaaaggaatcttcacaattatttacaactgGAGATGAGTCAATGGCTGTTGAAGCCTTGCGTCAATTAGGTGGAATGTATCCTTgctttgaaaacaaaaaagttaCATGTCCTCATTGtactaatatattcaatgaaacAGAAATACTTAAGCATCAGAGTATATGTCCATTTGACAAACATATCTGTAATATATGTGGTGAAaagtttgaaagaaaaattgatttaaacaaCCATTTAGTGTGTCATCAGGTTGATCGGCCGCATGCTTGTAGAACATGTGGAAATTTATTTCGTTCTAAACCTAATTTACAAACTCACATGGTTGAAGTTCATCAAGTTTCACGACCTCACAAATGTACTGTTTGTGGAGCAGATTTTCAAAGACCATCAAGTTTGTCTAatcatatgaaaattcatagtTATGTAGCTGGAAGAGCATTGATGcaaggaaataatataataaattgtcaaacattaaaaaatatttctaattcacAACAGTCATCAATTTTAACATCTGTTcaaacaatacaaaattttgatataccTCAAGTACAATGGACCATACAAACATATGATCAAAGCAATGTTGATGGTCTTACTAGTCATTCTGACAAAATAGACACTTTACAAGAGTTTACGGTATTACCTAATGGAGAAGTTGcacaattagaatataattcccaaaatactataaatgatCAAATATGTCAAGAATATAACTTAACTTtaaattcgtttaataattCTGATACTTTGTCAAAAGTAGaagcaattaatttgaataaccaGGCTAAAAGAACTTATATTGAAGTAGATGTACAAGAAAACAGAGGATATATTTGTAACCAATGTGGTGTTACCTTTGCACGTGcatcatctttatttttacatgaaaaaacaCATACAAAAAGTGATTGGGCTACTCCAGTTGAGTGTGAATATTGTGATAAACAATTTCaagattctaattttttaattactcacCAAGCATCCTGCACCAAAAAATTACTCCAAAATAATACAGAGTCTACTACCACTAATGCAAAGTGGGGTAAACATGCTTGTTCAGAATGtggtaaaaaatttacaacaaaacaaaaaatgtttagGCATCAATGGATTCATAGAAAAAAGACTCATTCCTGTGAAATTTGCGGATCACAATTTGAAAAGCAATCTGAACTTGATGAACATCGATTATCTGCACATCCAGGGGATTCACCATTTACTTGTAATGAATGTGGTAAAAGTTTTGTATCGCGTCAAGGACTCTGGGAACATGGTAGAACTCATGCAGGAAGTCCAGCTTACTTTCATTGTGATACTTGttcaaaaactttttcttcTAGACAAGgatatttaatacatcatCGTACACATACAGGAGAACGTCCTTATGGTTGTAAATTTTGTTGGAAAGCTTTTCGTGATGGAGGTACTTTAAGAAAGCATGAACGAATACATACAGGAGAAAGGCCTCATGTCTGTCCATTATGCACAAGAGCGTTTAATCAAAAAGTAGTTTTACGTGAACATGTTCGATGGGTACATGCTGCTGGAAAAAATGAAACTGAAATTTCTGGACCTCCATTTTCATGTCCTTTATGTGCTACGTTAACTCAAGATCGAGATGAATTATGTGCTCATATTGTCAAACATTCTGATCAAATGATAGCCGAAGCTAAAGCTAAAAGtaacaatgtaattataaaagcaaaaccattgaaaaagaaaggaaaagtaTTAGATAAACCaaaagcatataatttaaaagcaagAAGTCAAATGATTTCTGATATAGAccctaataaaactttatttaatattacagaacaagtaaaaaattcatcggaaatacaaaatacttatttaatcttaaaaaatgattataataatgtttctcaAATAGATAGACCGAATAAATCTGTTGATGTAATATCAAttgataaatctaatattaatgataaaaaaaatcaagaaagaacagttgatattataaataaagaagctaatattaatacaatgcaTATAATACCATTTACATCTGATGAAACAATTCATCTTATTGCTACTCATAAGCAAACTAgtactttacattttatatcaaaacaaaacgaaaactTACCTGTTTTAGCAATTCCTAATtctcaaaataatgaaagtttttcAGGTCAAATATCAGAAATTAATGACCCTGAATCATTAATGAAGTTGGTTACAAATAATTGTCCAATACACGATGATGCATTTGAAGAAACTGATAATTCAAAAACTATGATAATCAAGTCTGCTTCTATCCAATCTCCCAATATTAGGTATAagcaaattgtaaataaagaaaataatcataCTGAAAGTGAAGAATTAATATGTGGTATTTGTGGAAATGATTTTGATAACAAGAATGTATTAATGGAccatgtaaaatttcatatataa
- Protein Sequence
- METNENERYVSFSLNSVHEGVQDNISHEEICEPINDCVLQDSINEVSIDDINHDITETEVAVEILTENSGDEEENSVVYPIYIKKESSQLFTTGDESMAVEALRQLGGMYPCFENKKVTCPHCTNIFNETEILKHQSICPFDKHICNICGEKFERKIDLNNHLVCHQVDRPHACRTCGNLFRSKPNLQTHMVEVHQVSRPHKCTVCGADFQRPSSLSNHMKIHSYVAGRALMQGNNIINCQTLKNISNSQQSSILTSVQTIQNFDIPQVQWTIQTYDQSNVDGLTSHSDKIDTLQEFTVLPNGEVAQLEYNSQNTINDQICQEYNLTLNSFNNSDTLSKVEAINLNNQAKRTYIEVDVQENRGYICNQCGVTFARASSLFLHEKTHTKSDWATPVECEYCDKQFQDSNFLITHQASCTKKLLQNNTESTTTNAKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEICGSQFEKQSELDEHRLSAHPGDSPFTCNECGKSFVSRQGLWEHGRTHAGSPAYFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCTRAFNQKVVLREHVRWVHAAGKNETEISGPPFSCPLCATLTQDRDELCAHIVKHSDQMIAEAKAKSNNVIIKAKPLKKKGKVLDKPKAYNLKARSQMISDIDPNKTLFNITEQVKNSSEIQNTYLILKNDYNNVSQIDRPNKSVDVISIDKSNINDKKNQERTVDIINKEANINTMHIIPFTSDETIHLIATHKQTSTLHFISKQNENLPVLAIPNSQNNESFSGQISEINDPESLMKLVTNNCPIHDDAFEETDNSKTMIIKSASIQSPNIRYKQIVNKENNHTESEELICGICGNDFDNKNVLMDHVKFHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -