Basic Information

Insect: Ceratosolen solmsi
Gene Symbol: -
Assembly: GCA_000503995.1
Location: NW:1046945-1121741[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.055 3.3 7.4 0.4 2 23 480 502 479 502 0.91

2 18 0.13 7.5 6.3 0.7 1 23 514 537 514 537 0.96

3 18 0.03 1.8 8.3 3.6 1 23 551 574 551 574 0.94

4 18 0.00015 0.0091 15.5 5.8 1 23 580 602 580 603 0.95

5 18 0.15 8.9 6.1 0.3 3 23 610 631 608 631 0.94

6 18 0.0028 0.17 11.5 0.3 1 23 636 659 636 659 0.97

7 18 3.2e-07 1.9e-05 23.9 0.4 2 23 666 687 665 687 0.96

8 18 1.4e-05 0.00084 18.8 0.2 1 23 693 715 693 715 0.96

9 18 3.7e-05 0.0022 17.4 1.0 1 23 721 743 721 743 0.98

10 18 6.6 4e+02 0.9 0.2 6 20 927 941 925 944 0.89

11 18 0.00012 0.0073 15.8 2.0 1 23 946 969 946 969 0.96

12 18 0.23 14 5.5 1.6 1 23 975 998 975 998 0.95

13 18 0.046 2.8 7.7 0.2 1 23 1004 1027 1004 1027 0.95

14 18 3.3e-05 0.002 17.6 0.3 2 23 1034 1056 1034 1056 0.94

15 18 0.00088 0.053 13.1 0.4 1 23 1061 1083 1061 1083 0.96

16 18 2e-08 1.2e-06 27.7 0.5 2 23 1090 1111 1090 1111 0.97

17 18 8.7e-05 0.0053 16.3 2.9 1 23 1117 1139 1117 1139 0.98

18 18 7.6e-07 4.6e-05 22.7 0.5 1 23 1145 1167 1145 1167 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.055	3.3	7.4	0.4	2	23	480	502	479	502	0.91
2	18	0.13	7.5	6.3	0.7	1	23	514	537	514	537	0.96
3	18	0.03	1.8	8.3	3.6	1	23	551	574	551	574	0.94
4	18	0.00015	0.0091	15.5	5.8	1	23	580	602	580	603	0.95
5	18	0.15	8.9	6.1	0.3	3	23	610	631	608	631	0.94
6	18	0.0028	0.17	11.5	0.3	1	23	636	659	636	659	0.97
7	18	3.2e-07	1.9e-05	23.9	0.4	2	23	666	687	665	687	0.96
8	18	1.4e-05	0.00084	18.8	0.2	1	23	693	715	693	715	0.96
9	18	3.7e-05	0.0022	17.4	1.0	1	23	721	743	721	743	0.98
10	18	6.6	4e+02	0.9	0.2	6	20	927	941	925	944	0.89
11	18	0.00012	0.0073	15.8	2.0	1	23	946	969	946	969	0.96
12	18	0.23	14	5.5	1.6	1	23	975	998	975	998	0.95
13	18	0.046	2.8	7.7	0.2	1	23	1004	1027	1004	1027	0.95
14	18	3.3e-05	0.002	17.6	0.3	2	23	1034	1056	1034	1056	0.94
15	18	0.00088	0.053	13.1	0.4	1	23	1061	1083	1061	1083	0.96
16	18	2e-08	1.2e-06	27.7	0.5	2	23	1090	1111	1090	1111	0.97
17	18	8.7e-05	0.0053	16.3	2.9	1	23	1117	1139	1117	1139	0.98
18	18	7.6e-07	4.6e-05	22.7	0.5	1	23	1145	1167	1145	1167	0.98

Sequence Information

Coding Sequence: ATGTCGTCCCTCGACTACCTCGATCTTTGTAGGCTGTGTCTGGTTAAAGACCGTGTCTCGGTGCCCATATTTGAGGATGAGGGCGACGTGCGCCAGATATTTCTCAAGATCACCGCCTGCCTGCCGGTCAAGgTTTCACGTGAAGACAAACTGCCTAAGAAGATATGCGATGATTGTGTGTATaaagtagaattattttatcagtttTGGAATACAACGGCAAATGCTGAGAAACAACTATTGCAATGGCTCGGTGAGGTTGGTGGCCTGGAGGATAACCAGAGTTATGTAACAGAAGTCCTCGACTCAaATGTGATGAAACAGGAGAGGAATAGTGATAATAGGTTAGATGGTAGTGTAATGCAAGTAGGTGGGCATCAAAATAACATAGATATAGGCATAATTGACAATATGTCTCTTATAACATTGCCCACTGGAAATGAACAATTTACCACGGTTCCTATGGACACCACAAGTACTGTACAAACGGTTCAAGCAGTTCCAGGCTCAAGTACACAAACGAGTCATGATCAAATTGCTCAAAATCAAGCTACTGTACATTTAgttgaagaagatgaagagaGCGAGGAAGATGATAACTCGGATGAGGGATGTGACAACGAAGAAGGCCTAGCAGTTAAAGAAGAAACTGAAGAAGATCAAAGTGATCGACCCTTGGAGCCAACAACATTTGTAAACGTAGCAATACCTTGTGATGAAGCTGGCCCATCGGGACTTCAACAGcaaaaaatttcagaaatttctgaaatatcAATGCCTCAAAGCGCAGATGGTGATCCTAAAACTGGGTCAGTCGCGCGTTCATCTGGCCGTGGGCTCTTCATCTTCGAGCGTGAGTCCTTGGTAATGCGCAAATGGCAGATCCTCGAATTCGACGGCAACCCCTACTACGCCTTCGTACCCGAGGACAACGACGTGCCCATCGAGGAAGATTCGATACCCGAGCTCAGCGATGACGTCACCTTTGTCCTCGACGAACAGCTTACCGATAACGAGGTGGAGGACGATCGTCGCCTCGAAGACGAAGGGAAATCCGACGATTTGAGTGTGAAAGCCTGCAGCGCGGAGGCGTCGAACGAAGCCGACGAGGATTTTTCGGACGAACAGTCGCTGCAGACTTCCGAATTGATGAACGTGAAGCCCGTCATCGTTAACGGCAAGTTACAAAGTCAAAACGACAACGAGAAGTCTTATGGAGATTTGTATCAGGTGAAGGTTGAGGCTGGCGTCGTTACGCTTGAAAAGCTCGACGTTGAAAATCTGAATGTGAATCAACAGCAGTCGACGGCCGTTGTTGACGAGGCGAAGCTCGATAAAGCCGTGGCGGATGGGCACGACGTAACCAACGACGAGGGACGCGAAGAAGCGGAGATGGAGTTGGACGTAGGTAAACGCGGGCCCGGCACTCCGGCGCTCAAATGTAAGGCCTGCTCGGAGACATTTGAATCGACCATGGCATTTAGGAGACACGTAGCCTGGACGCATAAAAAGAAGGTTTGCATTCAAGAGAACGGAGCTTACATTTGCTCGGTTTGCGATTACCGGAGCTTAAAGAAGAGCCTGTTCGCCGCGCATCTGCAGCGCAAGCACGAGACCTGGTCGCGCAAACGTCAAAATTCGACGAACGCCTTTCCCTGTGGCGCCTGCGGCTTTGTCTGCCGATCCAAGCACTCGCTTCAATCACACTTCATTAGGAAGCACACCGACGACTACGAGCACCAATGCAAATTCTGCCCGAAGAAATTCAAAGTCAAGGGCGATCTGACTAACCACGTGCGCTTCCATCATAAGGAGAAGCCTGTTAATTGTGACGTTTGTGGTAAATTGTGCTTGAACAGCGGCTCTCTCTATGTGCATCAGAAATGGGCGCATTATAAGCCCAAGTTCGAGTGCATGATTTGCAAAAGGCGCATGGTGACTCAGGAGAATCTCGATCAGCACATGATAATGCAACACGAAAAGCGCGAGAAAATCGTGTGCGCCGAGTGCGGCAAGACCTTCAGCAAAAAGGATTCGTTTAAACGTCACATGGCTGTACATACCGGCAACAAGCCCTACGTATGCATAATATGCAATAAGCCCTTCGCGAGAAGGTCCCAATTGCGGCAGCACCTGCTTATACATACTGGCAAGAGGCCCTTTGTGTGCGATATATGTGGCAAAGCTTTCACCCAAAAGCCGGGCTTGATATGCCATAGGAAGACGCATCCGGGTACGCATCCGCCATTGCCAGTTATGCCGATCGGTGATATTGTTAAAGAATTTACAGAAGGTTACCTGGCGATCAATCCGCCAACAAAGATCGAGGACGAAGATCAAGATGATCCGgatgaggaagaggaagaggaggaagtggaggagggcGAGATGGGGGTGGGAGTTGATTTTGGGGAGGAGAATGAGGAGCATATTGAAGAGGTGGACGGGATGGAGGATAGAATAGTGGCAGAAGAGGTGTCGGTGAAGGGGGAAAGGGATGAAGGGAGGTTCGACGAGGTGTTGGAACAAAAGGTGCTCGAAGATAATATGAAGAATGCAAAAACAGAACAAGGCCAGGCTGCGCTTTGCCGAGTTCGAGGAAGGAAAGCTCTCAGCCAGATCGCGGTCGGGACAAACGCTACGAAAAACAGGATATGGAGGCGAGATCGACGACAAAGAGGATCGAGGACGTTCGGTCGGAACCCCGGACTCGCGACATCGGGAAGTAAAAGCTCGAGCGGGAGTCACGCGAAGCTCGAGCACAATCTCAGCGACAGATGCGACACGAGCTCCGTTAGCCCCGAGACCCTCCGGGATCACGGGAAATGCCATGACTACCGGTGCGAGCACTGCCAGTCGACGTTTCGGCTTCGCAGCCAACTGCGGGAGCACATAATGGAGGTGCACGAGTCCTTACCACGGTACGTGTGCGCCGAATGCGAGAACGTGTTCAAGTGCCGGCAGTCGCTGCGCGAGCACCTCGTGCGCAAGCACACCGAAGGTTTCCGCTTCGCGTGCGCCGCCTGCGGCAGTAAGTTCAAAGTTAAAAGCGACATGTACATGCACGTGCAGACGGTGCATAACGACGAGCGCGAGGCCGTCTGCGACGTCTGCGGCAAGAAGTACAGGAACGCGTTCGCCCTGAAGAAACACCTCTCTAATGCCCACAATCGGCGGCCCTTCGCCTGCGACGTCTGCAAGCGCAGACTCGCCACCAAGGAGTCGCTCGAGCAGCATACGCAACTCCATTTAAAGAAGGAGCGCGCGGTCTGCCAAGTCTGCGGCAAGACTTTCCGGGACAACGACGCCCTCAAGAAGCACATGAGGATACACACGGGGGTGCGACCCTTCCCGTGCAAGATCTGCGGCAAGGCTTTCAGGAGGCAAAATACACATAAGCAGCACCTGCTCACGCACACGGGGGTCAGGCCATACGTATGCGACATTTGCGGGAAGAACTTTACGCAAAAGCCCGGGCTCATCACACACAGGAAGAAGCACCCGGGCCCTCTGCCACCGTTGCCCTCGATCTCCATTGATTACGTCATCGCGGACCTTATGCAGACGAAGGCGAACGCTACTGGTGCACTGATCGATGATCCATGA
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEDEGDVRQIFLKITACLPVKVSREDKLPKKICDDCVYKVELFYQFWNTTANAEKQLLQWLGEVGGLEDNQSYVTEVLDSNVMKQERNSDNRLDGSVMQVGGHQNNIDIGIIDNMSLITLPTGNEQFTTVPMDTTSTVQTVQAVPGSSTQTSHDQIAQNQATVHLVEEDEESEEDDNSDEGCDNEEGLAVKEETEEDQSDRPLEPTTFVNVAIPCDEAGPSGLQQQKISEISEISMPQSADGDPKTGSVARSSGRGLFIFERESLVMRKWQILEFDGNPYYAFVPEDNDVPIEEDSIPELSDDVTFVLDEQLTDNEVEDDRRLEDEGKSDDLSVKACSAEASNEADEDFSDEQSLQTSELMNVKPVIVNGKLQSQNDNEKSYGDLYQVKVEAGVVTLEKLDVENLNVNQQQSTAVVDEAKLDKAVADGHDVTNDEGREEAEMELDVGKRGPGTPALKCKACSETFESTMAFRRHVAWTHKKKVCIQENGAYICSVCDYRSLKKSLFAAHLQRKHETWSRKRQNSTNAFPCGACGFVCRSKHSLQSHFIRKHTDDYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPVNCDVCGKLCLNSGSLYVHQKWAHYKPKFECMICKRRMVTQENLDQHMIMQHEKREKIVCAECGKTFSKKDSFKRHMAVHTGNKPYVCIICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGTHPPLPVMPIGDIVKEFTEGYLAINPPTKIEDEDQDDPDEEEEEEEVEEGEMGVGVDFGEENEEHIEEVDGMEDRIVAEEVSVKGERDEGRFDEVLEQKVLEDNMKNAKTEQGQAALCRVRGRKALSQIAVGTNATKNRIWRRDRRQRGSRTFGRNPGLATSGSKSSSGSHAKLEHNLSDRCDTSSVSPETLRDHGKCHDYRCEHCQSTFRLRSQLREHIMEVHESLPRYVCAECENVFKCRQSLREHLVRKHTEGFRFACAACGSKFKVKSDMYMHVQTVHNDEREAVCDVCGKKYRNAFALKKHLSNAHNRRPFACDVCKRRLATKESLEQHTQLHLKKERAVCQVCGKTFRDNDALKKHMRIHTGVRPFPCKICGKAFRRQNTHKQHLLTHTGVRPYVCDICGKNFTQKPGLITHRKKHPGPLPPLPSISIDYVIADLMQTKANATGALIDDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -