Csol004878.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- -
- Assembly
- GCA_000503995.1
- Location
- NW:646794-648335[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-08 2.6e-05 22.9 0.0 3 35 17 49 15 54 0.91 2 2 3.5 3.6e+03 -3.1 0.0 21 28 180 187 180 191 0.87
Sequence Information
- Coding Sequence
- ATGGTCaggaaatatataaagaaaagtcGGAGAAGAATGTGGTCAACGGAAGCTATGAAAATGGCAATCGAAGCCGTTATAAAGCAAGGACTCAGCATTAAAAAAGCTTCGATCGAGAATGAAGTACCTCAGGCAACATTATCGAGAAAGATTCATCAATGTCGGTGTGATCCTGATAAAAGTATCGATTTAGTTATGCATCCAAAAGcatcaaattttcaaacggTATTTACCAAAGAGCAAGAGTTAATTTTGtgccaatatattaatatgttagaGGATCAATTGGTTGGATTAACTACAATAGATATAAGGCGTTTGGCATTTCAAGTAGCTGAAAAATTAAGGATTCCCCATCGTTTCAATAGGGACATCGAGACTGCGGGCGAAGACTGGTATCGTGGATTCTTGAAAAGGAACCCCCGAGTTACCTTAAAAAGAGTCGATCACTTATCGGAAAAAAATCGAGAATTAAACGAGAATAGGGTGTATCAATTTTTTGACTTATTAGAAGGCACGATTAACAAATACGATCTCAAAGCCAGCGACGTGTACAACGTCGATGAAACCGTTATAACTTGTCTACCAAAATACGATTCTAATATCGAGAGCATTGAATTAGAAGAGTTTGCATCGGCTGAGCAAAACAAATTGGTTACCGCTGTAATTTGTCTTTGCGCCAATGGCGATCACCTGCCGCTCTTACTGATCTTTCCCTGCCTTAACAAGTGCAAAACCTTAGTTAAAGGCGCACCGCCCGGAGCATGGGCCGAATTCCATCCTACGGGCCAAATGCATCTGAGCATATTCATAAaatggttaaaaaaatttattcacttttcCAAGGCCACCAGAGACTCTCCCGTGCTACTCATACTGGATGGATATAGATCGTATCTCAAGGATTTACAAGtacttgaaataattcaagaaaatgGCGTTAATGTGATGTGCGTACCCTCGCAATTTGGTGATAAATTGCAGCCAATTCGGTTGAATTTTATGACCTGCTTAAGTAAAACTTATTCCTCGGAACTTATGAAATGGATTCGTTCGAATCCCAATTGTATCGTAtctatgaatgaaatatatcaacattttggtaatgcatttttaaaagttttaaaaattgccaCTCCCGCAAGCTGTTTTCGTGATACTGGCATTTGGCCCGTAGATAGAAATTTGTTGAACAAAGATGTTGACCGATCAGCGAAAACTGAAAGCCCGACTAAAGAAAAGAGTAAGTCATAA
- Protein Sequence
- MVRKYIKKSRRRMWSTEAMKMAIEAVIKQGLSIKKASIENEVPQATLSRKIHQCRCDPDKSIDLVMHPKASNFQTVFTKEQELILCQYINMLEDQLVGLTTIDIRRLAFQVAEKLRIPHRFNRDIETAGEDWYRGFLKRNPRVTLKRVDHLSEKNRELNENRVYQFFDLLEGTINKYDLKASDVYNVDETVITCLPKYDSNIESIELEEFASAEQNKLVTAVICLCANGDHLPLLLIFPCLNKCKTLVKGAPPGAWAEFHPTGQMHLSIFIKWLKKFIHFSKATRDSPVLLILDGYRSYLKDLQVLEIIQENGVNVMCVPSQFGDKLQPIRLNFMTCLSKTYSSELMKWIRSNPNCIVSMNEIYQHFGNAFLKVLKIATPASCFRDTGIWPVDRNLLNKDVDRSAKTESPTKEKSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -