Csol004199.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- lola_1
- Assembly
- GCA_000503995.1
- Location
- NW:6229187-6713559[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-09 2.2e-06 26.4 0.0 9 39 390 421 389 425 0.89
Sequence Information
- Coding Sequence
- ATGATGGAGGACGATCAGCAGTTCTGCCTTAGGTGGAACAACCACCAATCCACTCTAATACAGAATTTCGACACATTACTGGAGTCCGGCACGCTAGTTGATTGCACGCTGGCGGCGGAGGGGAAATACCTAAAGGCCCACAAAGTCGTCCTCTCCGCCTGCAGTCCGTACTTTGAGggTCTCTTGAGTGAACACTACGATAAACACCCAGTCTTCATACTCAAGGatgtaaaattcaaagaaCTGAAGGCCATGATGGACTACATGTACAGGGGAGAGGTGAATATATCCCAAGACCAGCTGCCGGCTCTGCTTAAAGCAGCAGAGTCCCTACAAATAAAGGGCCTATCGGAGAATAGAACGGGGGGTAGCGGCGGCGCCACGACCGGCAAACCCGACACGAAGCCATTGAAAACGGCGAGCTCGACGACGGCCTTGTCGGCGGTCGACATTCCACACGCGTCTTCCGGTCTAACCATAGAGAAGAACAGCAAAGTTCCTAGGCAGAGTATACAGCAGGTCTCCGTTAGTGACCTGCCCGAGGACTCGGCCAGCCCTCAACTCAGGGGTCTCTCCTCCAGGGAAGGATCACAAAGTCCGACCAGGAGAAGAAGGAGGTTGCGGAAAAAAAGTGTGGGCAACGATGATAACTCGATGGAAAATCACGAAGCATCAAACTCGAGCGACGTAAATATCGGTGCACCAGCGCTAGGAGTCGCGCCAGTCGCGGATGAGAAAAGCCATGCCGATCCTGCGGATTCGATCGGCAGGTCAGCTCTTATGCAGCAACTCACGAAACCCGCTGACGAGATGCTTCAGATTCCCATTGAAAAACCTGAGCCCAGCGATGAAATGATACAGCCAAAGTCTGAGTACCTGGATGACCAGGAGAGTGTGGAAGATCTTACGAATTTGGATGATGATATGAATGACCTCAACGAAATGGAACAAGACAATAGTAGAGCGGGCCCGAGTCACGATCCTTCCCAACATCCTGGTGGGTGGTTGTCGGGTCGCGGTACAAAGATCTCTCCTTCGCGGTCTCGTTCCAAGAGCGGCGTGCGTTTCATCGTTGCGCACGATCATCAATTAGCCGTGGAGACGCTGCTACGCTCGCTCGCCGGCAAGCACGGCAGGAAGTATAGCTTAGAGTCGGTTAGGATGTCGCTGGAGGCTATTCTGAAGCAGGGCATTAGCACAACCCAAGCGTCGGAGTTATATGGCATCAATCGGTCGACTTTgcagttttatttgaaaaagttgaACGTCGTGAGGAGATGGCGTAGGCGATTGAGGCAACAGTCCCACGACCTTGCTACCGACTcccaacaatGTCTCGCGTCGTGGCACATAGCTGGAATGCGAGGCGTGGGTGCCGCAGCTGGACCGCCCGGATCGCAAGACGAAGTTTTCCTCGCCGCGCACGAAGCCGCCCAAGCCCAACGCGACTCTCAAGTTTTGGAGATTGACAATATGTCAATTAATCGTGTTAATCATTACGATAACAATGAGGACTCCGATACATTGCAATactcgataattttaaataagaaaatccaAAAACCGAAAAAAGAATCGACGGTGGATATTAATGAAAGGTATCAGCAATACTCTATACAAAGTGTCGGTAatgttgaagaaaataatcagGTGATGACAATGACGAGAGAAAGACAAGGGAGACGAAGATTGGATAGATTAGCCAAGACAAAGTTGATCGTCGAATCACAAATAAAGCAAATTCCAGTAACTAAagtaacaaaaagaaaaaggggTCGCCCGCCAAAAgaagaaagtaatattataaaaaaaagaccaGGAAGACCGccaaattatcttaaaagcCTACAGCAAGCATTTGAGCACGATCGATCAAAGACATCCTTGAATAAAAGAAAGCTTAAAAAAGAATCGCGACGTAAAACGATGACTGGCACGAATATAAAGGAATGCGATTACGATgctctattaaaaaatcaaatggtgattttacaaaaatcgtataataaatcaagaaaTAAGTTCGAAtcgttaataaaagaattgagAATGTCATATGCACCGGAGGCTAAagttatgaagaaaaaacgtGGTAGACCTGCGAAGATTCTTAGTATGCCTGTTCCACAAAAGGATGTAATGGcaggtttattaaataaaaaatcagaaaAGCGACGCAAAAAATTATCCATAAGTGACGAAAGTGAAgcaattacaaatatcatttcaaatgTTCAACATCAGTCTAATGTAAAAACTTCTGTCTAA
- Protein Sequence
- MMEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLPALLKAAESLQIKGLSENRTGGSGGATTGKPDTKPLKTASSTTALSAVDIPHASSGLTIEKNSKVPRQSIQQVSVSDLPEDSASPQLRGLSSREGSQSPTRRRRRLRKKSVGNDDNSMENHEASNSSDVNIGAPALGVAPVADEKSHADPADSIGRSALMQQLTKPADEMLQIPIEKPEPSDEMIQPKSEYLDDQESVEDLTNLDDDMNDLNEMEQDNSRAGPSHDPSQHPGGWLSGRGTKISPSRSRSKSGVRFIVAHDHQLAVETLLRSLAGKHGRKYSLESVRMSLEAILKQGISTTQASELYGINRSTLQFYLKKLNVVRRWRRRLRQQSHDLATDSQQCLASWHIAGMRGVGAAAGPPGSQDEVFLAAHEAAQAQRDSQVLEIDNMSINRVNHYDNNEDSDTLQYSIILNKKIQKPKKESTVDINERYQQYSIQSVGNVEENNQVMTMTRERQGRRRLDRLAKTKLIVESQIKQIPVTKVTKRKRGRPPKEESNIIKKRPGRPPNYLKSLQQAFEHDRSKTSLNKRKLKKESRRKTMTGTNIKECDYDALLKNQMVILQKSYNKSRNKFESLIKELRMSYAPEAKVMKKKRGRPAKILSMPVPQKDVMAGLLNKKSEKRRKKLSISDESEAITNIISNVQHQSNVKTSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305711;
- 90% Identity
- iTF_00305711;
- 80% Identity
- iTF_00305711;