Csol001935.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- bab1
- Assembly
- GCA_000503995.1
- Location
- NW:536954-543182[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-06 0.0028 16.4 0.0 2 38 206 241 205 247 0.88 2 4 1.1e-13 1.2e-10 40.0 0.0 1 39 255 292 255 296 0.95 3 4 0.00012 0.13 11.1 0.0 7 34 313 339 309 345 0.89 4 4 2.1e-12 2.2e-09 36.0 0.0 4 39 370 405 367 410 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAATCGGCAGATACGGCGACGACTGATCAGACGTACTTCGAAACCTCTTATTGCTTCAAATGGAGCAATTACCAGAGTTATTTGTCCGAGGTCGTACGCCAGTTACTCGAAGAGGAATGCATGGTCGACGTGACGCTCTACGCGGGCGGAGAGCGCATCCAAGCTCACCGCCTTGTCTTGTGTGCCTGCAGTAGTCTGTTTCAAgaGATTTTAAGTCAAGTTAATGAAGAACATCcgactattattttaagtgaCATATCCCCTCAAGATGTTAGGTCGATTGTGGAATTCAGTTATAATGGAGAAGTTCGAATTccagttgaaaatattaataatttattggctGCAGctcattctttaaaaatatatggctTGATGGAGatcgAAGGTCTTGATGAATCCGAAATACCTTACGAGATAGATACAACTACCGAagaagcatatatttttagtgatttgaataaaacggaggaagaagaaataaaattttttgaacaaTCAAATGACGAAGAcattaaagaaacaaaaacaagaattttaaatggTGATTCAGATTCCATTCATAAAAAGAGAAGGCGAAGGGAGAGCGTTTGCAAAAAGGAATATAGCGACGAAATGTTATCAGCAGCTATAACTGACATACGTTCTGGAAGTTCATTATTAGATGCAGCTGCAAGGAATCATATTCCTAGATCTACTCTTTATATGCGTGCAAAAGTATTAGGAATACCTTTAAATCCTTCTAGAAGTGAATATACAAACGAAGATATGAAGTCTGCTATAGATGCAGTTATTGcTGGATCCAGTTTACAACAAGCTTCAGATTTATATGGAATTCCAAAAACAGTTTTATGGAGGAGAATTCAAAAAGAGGGATGTCAAACACCTCGACATGatacaagaaaaaattatggtGCTGAAAAGAGGGAAGCTGCTGTGCAAGCATTAGCAAGGGGCGAAACTCTTACAAAAGTTGCAAATGAGTATAAGatCCCAAAAACCACCTTATTTCGTGACAAAGCTCGATTAGTAGACGAAGGAAAACTGCCGTCATCGTATTGGAGAAAACGTAAAACCGATACCGAAGATTTAAAACGATCTCGTTTAGAAGAAGCAGTCGCCGCATGCAAAGATGGAAAAATGTCTCAAGCGACAGCATCTGTAACTTATCAAATACCTAAGACCACTATATGGAGACGTCttcaaaaagatattaaaaaagaggTAGTTACATCAACTACAGAACTATgtgtgaaaaatgaattatctcAAGAAAAGAGTCCGGAGACAATAAAGACAGAAGAATTAAATGATGCCGATTTTGAAGCATATTGTCcaGATGATTCAGAAatgaatataacatatatggATGAAAGTAATATATCAGATGATCCGGTTATAATACTTGCGAGCGAAGATGTACACGAACTAAATTTACCAAACAGCACATCGTTAGTCGTTGTCCAAGagaataccgatgaaaattttatgtcatGTGAATTAGAATTGGatgaaaattcatcatttGCATCGAAGAGTTAA
- Protein Sequence
- MSESADTATTDQTYFETSYCFKWSNYQSYLSEVVRQLLEEECMVDVTLYAGGERIQAHRLVLCACSSLFQEILSQVNEEHPTIILSDISPQDVRSIVEFSYNGEVRIPVENINNLLAAAHSLKIYGLMEIEGLDESEIPYEIDTTTEEAYIFSDLNKTEEEEIKFFEQSNDEDIKETKTRILNGDSDSIHKKRRRRESVCKKEYSDEMLSAAITDIRSGSSLLDAAARNHIPRSTLYMRAKVLGIPLNPSRSEYTNEDMKSAIDAVIAGSSLQQASDLYGIPKTVLWRRIQKEGCQTPRHDTRKNYGAEKREAAVQALARGETLTKVANEYKIPKTTLFRDKARLVDEGKLPSSYWRKRKTDTEDLKRSRLEEAVAACKDGKMSQATASVTYQIPKTTIWRRLQKDIKKEVVTSTTELCVKNELSQEKSPETIKTEELNDADFEAYCPDDSEMNITYMDESNISDDPVIILASEDVHELNLPNSTSLVVVQENTDENFMSCELELDENSSFASKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464086;
- 90% Identity
- iTF_00305724;
- 80% Identity
- iTF_00305724;