Csol001074.1
Basic Information
- Insect
- Ceratosolen solmsi
- Gene Symbol
- retn_1
- Assembly
- GCA_000503995.1
- Location
- NW:4320379-4560505[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-25 1.8e-22 78.6 0.0 2 89 275 360 274 360 0.96 2 2 3.5 5.4e+03 -3.1 0.0 34 52 429 450 415 467 0.68
Sequence Information
- Coding Sequence
- ATGGAGATCTTGGACGAGTACCAGGACAGCATGGGCCAGGCCGTCGCCGGCGACGTCGCCGTGGCCAATATGGCGAGTATCGCTGCCGGCATGGCCCATCATCGCCACACTCCTGACAGCCCGATGTCGCATCAGGAGGAGGACCTCTCGGATCCCGATCGCCAGGATGAGGAGAGCGGGGAGGAACTGCCACAGCAGCCACTACAAGGCACCAATCGCTCCTCGGCAGATAGTACACCCGTGCCGACGCCACTCACACACCTTAACAGCCTCATGAGCTCCACTCATCCACACTTTTTAGCCAAGATCAAACTCGAGAACGACATGGACATCCTGAACAACAAGAGCGGTCTCGAGGCCCTTCAAGCGGCAATGAGCGGTGGCGGCTTCAACCTGCCGTTCTCGTTCCCGGCTCCGGGCGCGTTCCTCGCCCCGggtcagcagcagcagcaccccCAGCATCCGGGCAACCCTCTTCTCGGGCAGTCCGGCAGCAGTAACGGTGCCGGACCCGGAAGTAATAACAACAACGGCGGGGGCAGTGCCCACGCGTCCTCGGCGAGCTCACACTCTAGCGAGTCGTCGCAGGGCAGCGGACGCAACGGGCTCGAGGTCACCGCCAACCGAGAATCGGcgggtagtggtggtggtggtggtgtcggtggcggtggcggtggtggcggtggcggtggctgCGGTACCGGCGTCGGGGTCCATACCCAGCCGGGCTCCCAAGGACAGCAGTCCGCCCACCAGCAGCAGACCAGTTGGAGCTTCGAGGAGCAGTTCAAACAGTTGTACGAGATCAATGATGATCCCAAGAGGAAGGAATTTCTCGATGATCTCTTCAGTTACATGCAGAAGAAAGGAACACCGATAAACCGGCTGCCGATAATGGCAAAGTCGGTCCTCGATCTCTACGAGCTATATAACTTGGTGATCGCCCGGGGCGGTCTCGTCGACGTCATCAACAAGAAGCTCTGGCAGGAAATTATCAAGGGCCTTCACCTGCCGTCGAGCATAACCTCCGCCGCCTTCACATTACGCACCCAATACATGAAGTACCTGTACCCGTACGAGTGCGAGAAGAAGCGGCTGTCAACGCCGGCGGAGCTCCAGGCGGCGATCGACGGCAATCGACGCGAGGGTCGGCGCAGCAACTACGGGGCTTACGGGcccggcggcggcggtggtggtagCGGGGGTCCCGTTGACGGCCTCGTCCACCAGCGCAGCCCTCACACGCCGAGCTCCCTGGCCTCGCTTCACGCCCAGATCTCGCCCCTGTCACTGGTGACGGCGGTGCAGCAGGCCGCGGCCGCCGGAGGCCAACATCAGGTCGGCCAGCAGAGCCTCGTCAACGGCAGCGCGGCGCACACACCGCTGCCCCACCATCCCCATCATCCGCAGCATCAGCAAGGTGCCCTGGGTCAGCCTCCCAATGCAGGTATAGCCCCGGACTTCGAGGTGCGCATGGCCGAGTACGTGAAACACTTGCAGCGCGAGATGGGAAGGCGCGCGGCGGGCTCGCCCCCGGGCATAATGGGCCACCGTCAGGGCAGCACGTCGCCGCCAGCGAGATCGCCGTCGCGCGAGGCTGCACTCTTCGAGATGTCCCGGCTCACACTCTGGAACATGTACAACAACAATCTGCATCCGGGTATCGGCTACCCCCAGGCGGTCTCGCCCCAGCCGAGCTCGCATTCTCCCCAGGCACAACCGGCCAGCCCCGAGCCACAGAAGGAGGCACTCGATCTGGGATTGAGATCCTCGCCAAGCTCTTCGTCACCCGCTCGACAAAGTCCCCCATCGTCCGGTGGCAGTATCGCCATTAAGCGCGAGGTCGAGCACGGCGTGACCGCCGGCTCGGCGTCCAACAAGAGGCTATGCATGGACGAGGACGGCCACGGGGACAACAACGTTCCCGCCCTCCCCGGCGCACACATCAAGATCTCTAATCGAGGTGACGGCCGCGACAACTCGCTGGTGGTGAGCATGGAGCTGAACGGCGTGATGTACCAGGGCGTGCTGTTTGCCCAGACAGACGGCAGGGCCAGCCTCGCAGCCTCGACAAACAACAACGAGACGAAGGCCTCGTCGCGCAACGTCGTCTCGTGA
- Protein Sequence
- MEILDEYQDSMGQAVAGDVAVANMASIAAGMAHHRHTPDSPMSHQEEDLSDPDRQDEESGEELPQQPLQGTNRSSADSTPVPTPLTHLNSLMSSTHPHFLAKIKLENDMDILNNKSGLEALQAAMSGGGFNLPFSFPAPGAFLAPGQQQQHPQHPGNPLLGQSGSSNGAGPGSNNNNGGGSAHASSASSHSSESSQGSGRNGLEVTANRESAGSGGGGGVGGGGGGGGGGGCGTGVGVHTQPGSQGQQSAHQQQTSWSFEEQFKQLYEINDDPKRKEFLDDLFSYMQKKGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKRLSTPAELQAAIDGNRREGRRSNYGAYGPGGGGGGSGGPVDGLVHQRSPHTPSSLASLHAQISPLSLVTAVQQAAAAGGQHQVGQQSLVNGSAAHTPLPHHPHHPQHQQGALGQPPNAGIAPDFEVRMAEYVKHLQREMGRRAAGSPPGIMGHRQGSTSPPARSPSREAALFEMSRLTLWNMYNNNLHPGIGYPQAVSPQPSSHSPQAQPASPEPQKEALDLGLRSSPSSSSPARQSPPSSGGSIAIKREVEHGVTAGSASNKRLCMDEDGHGDNNVPALPGAHIKISNRGDGRDNSLVVSMELNGVMYQGVLFAQTDGRASLAASTNNNETKASSRNVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -