Cfus014486.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000006.1:10016465-10020557[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.3 30 5.5 0.5 1 16 173 188 173 189 0.89 2 12 0.0082 0.84 10.3 4.6 2 23 296 318 296 318 0.91 3 12 9.4e-05 0.0096 16.5 1.5 2 23 348 370 347 370 0.95 4 12 0.039 4 8.2 1.0 1 23 527 550 527 550 0.95 5 12 0.0013 0.13 12.9 0.0 3 23 600 621 599 621 0.90 6 12 1.4 1.4e+02 3.3 0.1 9 23 625 640 624 640 0.85 7 12 0.0066 0.67 10.7 3.7 2 23 682 704 681 704 0.96 8 12 0.023 2.3 9.0 2.7 3 23 719 740 717 740 0.94 9 12 1.3e-05 0.0013 19.2 0.2 2 23 786 808 786 808 0.94 10 12 7.6 7.8e+02 1.0 2.2 1 23 861 885 861 885 0.96 11 12 0.0017 0.18 12.5 0.0 2 23 903 925 902 925 0.96 12 12 0.0092 0.94 10.2 0.5 1 23 1000 1023 1000 1023 0.98
Sequence Information
- Coding Sequence
- ATGTCATTCGGCCAAGAGACATGCCTGCCAGATCCGGCGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAGCGCGAGTCCCGCAGACGATTGCTCGGCGACTCGGAAGGACTGCCGAAGAAGCGACGGAAACAGTCGACCCCCGTGAAGTTCTCGACCTCCTCTCTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGAGGTGGACGGGGAGGGGGAGCAGTCGCCCGACGACCTCCTCGTCCCGAGCAATCGCAATCGCAATCGCAATCGCAATCGCAATCACAATCACAACTCGAATAACCACAGCCACAGCCACAACCACAATCACAGCCACAGCCACAACCACAACCACAACCACAACCACAATCATCTGGAGTACGATGACGAAGAGCGCTGCGAGCTCGAAGGTAAGCCGACCTCGTCGCCGGATTCTAAATCAGCCCAGGGCCACTCGACCATCAAAGACGTTAATCTCAACAACGAGTTCCGTTGCCAGTATTGTAGTCAATTTTTTGATAGCCGCGTCGCGCTCGAGGGCCAATCGCGAGCGAGCCCGGAGACAATAGACCATTCCGATCAGTCCATCAGTCCTATCAATCTCTCGGGTATTAGCATTAGGAACTTCGCGTCGAGCGCCTCTTGGTTGCCGGTACAGGGTCAATTACAGGCCCAGGGCGAGTCGACGCTGGCCAAAATCGCCGCGAGGAATAACAATCACTTTCAGGCGATGCCCCCGGGGTTCCCCGGCCCTCTCGCACAATTCCTACCGCTGCCCGGCTTCCCCATCCCGGACACCGCGCAAATTCAAAGGGCCGCCATCGGCCAATTCCCAAAGATATTCAATCCCGACGCGTACTGTGATCTCTGTAATAAGGAATTTTGTAACAAATACTTTCTCAAGACCCACAAGGCCAACAAGCACGGGATCTACGTGGATCCGCCGCTGGGCCAGTCCCAGCCCGGCGACCCAGGGGCCGGCCCGCCCAACGCCTTCCTCTCGGCTCCCATGTCTTGTGACATGTGTCCGAAGCGATTCAAAAACGACGAGTCCTTACGGAAGCATAAGCAAAAGATCCACGGCAACGCGAGCAACGAGATTATGGACTCGGCTCACGTGCAACTGAGCCAGCCGTCCTCGAGCGAGGAGGAGCGGCAGAGTCCCGGGGGCATGGAAGCGCTATTCAAGCAAGAGTATAACCTGGAACAGGATGAACGTCAGGCCTACGCGCCGAAGCATCCTCTCTGCGCGACGTCACCCCAGCTAAAGGAACAGCCGAGCTTCAACGGGGACGGCTTCCATCGCGTCGGGGTCATGAATCCCGAGGCCTTTTGCGAGATGTGCTGCAAGGAGTACTGCAACAAGTACTTCCTAAGGACGCACAAGCTCAAGCGTCACGGGATCCTCGTAACGGACAGCGAGAATTCACCCAACAGCAGCCTCGGGGCCGGCGGGCTTACCTGGCACCAAATCCAGACGAGCCCGCTGAACCTCATCATGTCCGACGGTATGGGGAACGGGTCCGAGTCCGGGGACCGGACCGAGGAATACGCTTGCCGATCCTGCGGCATTCGCTTCCAGACCCAAGACCTCTATCACCTTCACGTCGAAAAGATTCACGAGAACGAGGAGGCGCGCTCGCCCCCGAGGCCCGAACTCGACGTCGACCTGACCGATCCGCGGAACGACTCCATCTCCGAGGATCTACAAAAGCTCCAGACCATGATTCTCCAGCTCAACGGCTTGGAGTCCAATAAAGCCGCCTCCTGCGCCCTCTGCGGCAAGGATTACGATACACCGGCTGCTCTGAGGAACCACATGGTGGCCGAGCACGGAGTCAGGGAGTTCAGCAGCCAGGAAGCCCTGAGGAAGCACGTAGCGGAGGACCACCAGCCGCTGACGCCGACGAGCTCGACTCCCCAACTGCCCTCCTCGGTCGCGTCCACCCCCAAATCCAACTCGTCCCAGCAAGCGGATCGCAAGCCCGTCTCGTCGATCACCCCGACCTCGAGCTACTGCGAAATATGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACCCACATGCAGAAGATGCACGGCATCGAGATAGAGAACGGCGCCCAGATCGGCGGCGTCATCTGCAACATATGCAAGAAGGAGCTCTGCAGCAAGTACTTCCTGCGCGTGCACAAGCAGAACACCCACGGGATCGTCGAGGAAGGCGCGACAGGAGTCGGCAAGCAGGAGACCGTCGACGGGCCACCGAACCCGGAAGACCTCGCCCTCAAGCCCGAGCAGCTCGGCGACCTCAGCCTCCGCTACATCACCCACTTCACCGAGGTCTGTCCCATCTGCAATCGGCGCTTCCGCAGCCCCAAGTGGCTCAAGGTCCACCTGCAGGGCGAGCACGGCAAGGCCGGGATAGAAAAGTGGCGCGAGATCGAGCAGTACCAGCAGCCGAGCCCCCCCAATCAGCAAATAAGGGCCGACCTGGCCGCCCTCGGCAATCAGGTACTATCGAACTTCTTCGGGAACGCAGGGAGCGACGACCAGCCGGGGCAGACCTACCGCTGTTCCCAGCTCCACTGTAGCTTCTCCACCTCGATCCTGCCGCTGTTCTTCCTTCACGAGAGGTCGCACAGCCACCATCAGGGTCCGGAGGGCCCGGGTGTCGAGCCCGAGCGGCTCGTGCAATGCCCGATCTGCAGCCAGAGCTTCGCCCAGCCGGAGATCCTGAGGCAGCACGTGGCCACGCGGCACCCGAGCCCCTTCCCGGCTCTGCTCTCGCAGTTCCCGATACCGATGCTCGGCGATTTCGGCCTCGGGGCCGAGGACCAGGCCCAGTACCAGGAAAGAAACGAGTACGCGGAGCCGAGGGAGGACCCGCGCCAGCCGAGTCCCCACATTATGAACGAGATCGACACGAACAAGATGAGGAAGCAGGAGGAGAGGAACGCGGTGCAGGTGATGCCCCAGGGTGCGTACAAGTGCGCCCAGTGCGGCTTCGCCACGGCGAATCTCAACCGCATCAAGAAGCACATAAGGAAGGACCACAAGAGCATCGGCGACCCGGCGGAGACCGTCCTCGCCGAGCTCACCAAGACCCTCAAGGACGTGGCGAACAAGCACAAGGTGCCCGCGAGCTACGCCGTGCCCCAGGACATTAATCACAGCCCCGACAAGACCATCATGCAGCCGTTCATCATCGAGGAGATCGAGAGCCCGCGGAACGGTGCTGCCGGCGACTGCGACGACGAGGACCCGGGCGCCTCGCCGCCGAGGAGATTCGCCCCTGCCCTCGTTTTCCTGCCGGTAAAGACGAGGGTAAGCGGCGCCCTCACCATGTCCTTCACCCTCAACCCCGCCTGA
- Protein Sequence
- MSFGQETCLPDPAEIDSEGSSCEERESRRRLLGDSEGLPKKRRKQSTPVKFSTSSLAXXXXXXXXXXXXXXXXXXREVDGEGEQSPDDLLVPSNRNRNRNRNRNHNHNSNNHSHSHNHNHSHSHNHNHNHNHNHLEYDDEERCELEGKPTSSPDSKSAQGHSTIKDVNLNNEFRCQYCSQFFDSRVALEGQSRASPETIDHSDQSISPINLSGISIRNFASSASWLPVQGQLQAQGESTLAKIAARNNNHFQAMPPGFPGPLAQFLPLPGFPIPDTAQIQRAAIGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPLGQSQPGDPGAGPPNAFLSAPMSCDMCPKRFKNDESLRKHKQKIHGNASNEIMDSAHVQLSQPSSSEEERQSPGGMEALFKQEYNLEQDERQAYAPKHPLCATSPQLKEQPSFNGDGFHRVGVMNPEAFCEMCCKEYCNKYFLRTHKLKRHGILVTDSENSPNSSLGAGGLTWHQIQTSPLNLIMSDGMGNGSESGDRTEEYACRSCGIRFQTQDLYHLHVEKIHENEEARSPPRPELDVDLTDPRNDSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPAALRNHMVAEHGVREFSSQEALRKHVAEDHQPLTPTSSTPQLPSSVASTPKSNSSQQADRKPVSSITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEEGATGVGKQETVDGPPNPEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSPKWLKVHLQGEHGKAGIEKWREIEQYQQPSPPNQQIRADLAALGNQVLSNFFGNAGSDDQPGQTYRCSQLHCSFSTSILPLFFLHERSHSHHQGPEGPGVEPERLVQCPICSQSFAQPEILRQHVATRHPSPFPALLSQFPIPMLGDFGLGAEDQAQYQERNEYAEPREDPRQPSPHIMNEIDTNKMRKQEERNAVQVMPQGAYKCAQCGFATANLNRIKKHIRKDHKSIGDPAETVLAELTKTLKDVANKHKVPASYAVPQDINHSPDKTIMQPFIIEEIESPRNGAAGDCDDEDPGASPPRRFAPALVFLPVKTRVSGALTMSFTLNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -