Basic Information

Insect: Ceratosolen fusciceps
Gene Symbol: Clamp
Assembly: GCA_018883505.1
Location: RCIC01000002.1:9911030-9917951[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.2e-05 0.0012 19.3 2.4 1 23 166 188 166 188 0.98

2 8 0.00023 0.023 15.3 0.4 1 23 220 243 220 243 0.93

3 8 6.4e-05 0.0066 17.0 2.6 1 23 342 364 342 364 0.97

4 8 8.7e-06 0.00089 19.7 0.1 1 23 370 392 370 392 0.98

5 8 3.9e-06 0.0004 20.8 4.4 1 23 398 420 398 420 0.98

6 8 3.3e-07 3.4e-05 24.2 1.9 1 23 426 448 426 448 0.99

7 8 3.4e-06 0.00035 21.0 1.0 1 23 454 476 454 476 0.98

8 8 3.3e-05 0.0034 17.9 0.6 1 23 482 504 482 504 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.2e-05	0.0012	19.3	2.4	1	23	166	188	166	188	0.98
2	8	0.00023	0.023	15.3	0.4	1	23	220	243	220	243	0.93
3	8	6.4e-05	0.0066	17.0	2.6	1	23	342	364	342	364	0.97
4	8	8.7e-06	0.00089	19.7	0.1	1	23	370	392	370	392	0.98
5	8	3.9e-06	0.0004	20.8	4.4	1	23	398	420	398	420	0.98
6	8	3.3e-07	3.4e-05	24.2	1.9	1	23	426	448	426	448	0.99
7	8	3.4e-06	0.00035	21.0	1.0	1	23	454	476	454	476	0.98
8	8	3.3e-05	0.0034	17.9	0.6	1	23	482	504	482	504	0.97

Sequence Information

Coding Sequence: ATGGCTTTAGAATCAAATGGTAGCAACTTGGTGTGGTTGAACACAACGCGAGCCGATCAAATACAGCAGGGCCAACATATACAAGCACCAGTGAAGTGTTCCATGTTTACGCAAACTGACCAGACCAACAGCTTCACACAAACTGAGCAAAGTGATTCCAGTTACGCTGATCAGCGGCAGCCCCAGCAAACAACAATGTTCGACCCTCAGCAGATCCAGCAACAGCAAGCTGCGCAGGGCCAACAGTCGCAGCAGCAGCAAACACAACAGATGTATGTAACAAGTGATAAGAAAGAAGATAAATCTGGGCAGCAGTCAGCTACCACAGAATTCCCTTTCTATTATAATGTCAACATGCTGCAAAAAGTTCAAGCCAATGCAGTGGGTACCATTGGTGCCATTACCACTGACGATAAGGGTTGCTATCGCTTTGATGTGCAACCTGTTGGCTACAACACTCTTATTAACCAGATGAATTTGGCTACAAATACGACTTTCAAATGTGACATATGCGGGCTGGTATTTGGTCACATGAGTCTACTAAATCATCATAAGCGTATTCACAATTCAACGCCGAGTAATTTGCAACAGCAGCCACAGCAAGTAGTGGTGCAAACACCAACAACGGTGACTGTTGCAACAACTCCAGAAAGGCCATATACGTGTGATGTATGTGGAGCTTGTTTTGCGTTACCAGGAGAATTAAAAAGTCACAAGACAAATATGCATCAGAAACCGAAAGTGCAGATATGTGAAGATTGCGGAAGTGAAGATCCTTGCGAGCATCATCCTACTAAAATTAAAAAAACTATTAAACCTGGTCATCATCCAGTAAAGCGGCGTGGCGTTACCAGTGTGACCAAGTGTCACAAGTGCAATGGTACAGGCATCATTTTCATTGGTAAACACAACGAAAAACTAGATTCCGGAATCAGTTCCCTCGCTAAGTGTAGCGGCTGCAAGGCAACAGGCCGCATCATCATAGGAAGCGGAAAAGCAAACAGTCAGCAGCAGGAGAAGCCGTTTCATTGTAACGTTTGCGATGGCACATTTTCAAGATATTCCTCTCTTTGGTCTCACAAGAGACTGCACTCCGGCGACAAACCATTCAAATGTGAAGTCTGCGGCTTAGCTTTTGCTAAGGCGGCGTATTTGAAAAACCATGGCCGCGTTCACACAGGCGAGAAGCCTTTTAAGTGTAGTCACTGCGGTATGCAGTTTTCACAATCGCCCCATCTCAAAAACCATGAGCGCATTCATTCTGGCGAGCGACCATACCAGTGCGAGGTTTGCGAAAAAACGTTTGCTAGGCATTCGACTCTGTGGAATCATCGTAGGATTCATACGGGAGAGAAGCCATACAGGTGCAACATATGCGGCAGTGCGTTCAATCAAGCCACGCACCTCAAGAATCATGCTAAGGTCCATACTGGCGAGAAACCGCACAGATGCGACATCTGTGAGATCGGCTTCTCCGACCGTTTCGCTCTTAAGCGCCACCGGGCGATCCACGAGAAATACGGACAGACGGCCGCGCGCAACAGCAACGCCAATGCCAGCAACGCACAGCAGGCAAACGCAAGTAATCAGCAGCAAGCACAGCAGCAACAGGCCCAGCAGCAGCAGCAGGTCGTTGTCGTGAACGCTACAACGCCGGTTTCTGTAAGCCAGACCCAGGGTCAGGCGGTCATGCTGGAGGAGGTGTACAAGTGCCAGGTCGCCTTCCCCGAGCCCAAATGA
Protein Sequence: MALESNGSNLVWLNTTRADQIQQGQHIQAPVKCSMFTQTDQTNSFTQTEQSDSSYADQRQPQQTTMFDPQQIQQQQAAQGQQSQQQQTQQMYVTSDKKEDKSGQQSATTEFPFYYNVNMLQKVQANAVGTIGAITTDDKGCYRFDVQPVGYNTLINQMNLATNTTFKCDICGLVFGHMSLLNHHKRIHNSTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHNEKLDSGISSLAKCSGCKATGRIIIGSGKANSQQQEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSHCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTAARNSNANASNAQQANASNQQQAQQQQAQQQQQVVVVNATTPVSVSQTQGQAVMLEEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00845407;
90% Identity: iTF_01524203;
80% Identity: -