Cfus003342.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000020.1:2806159-2810363[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.012 1.2 9.9 0.3 6 21 12 27 6 28 0.86 2 14 1 1.1e+02 3.7 0.0 2 20 34 52 33 53 0.92 3 14 0.43 43 5.0 0.8 1 15 236 247 236 256 0.76 4 14 0.059 6 7.7 0.7 1 20 379 398 379 400 0.94 5 14 0.00019 0.019 15.5 1.0 2 23 405 426 405 426 0.98 6 14 0.0058 0.59 10.8 1.5 1 23 437 459 437 459 0.95 7 14 0.055 5.6 7.8 0.2 1 23 478 499 478 499 0.92 8 14 0.0031 0.32 11.7 0.0 2 23 505 526 504 526 0.95 9 14 4.1e-05 0.0042 17.6 4.8 1 23 586 608 586 608 0.99 10 14 5e-06 0.00051 20.5 5.0 1 23 614 636 614 636 0.98 11 14 0.00011 0.011 16.3 4.6 1 23 642 664 642 664 0.98 12 14 1.2e-06 0.00013 22.4 0.8 1 23 670 692 670 692 0.98 13 14 7.8e-05 0.008 16.7 0.2 1 23 696 718 696 718 0.99 14 14 0.00029 0.03 14.9 0.1 1 23 726 748 726 748 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCTATAAATTTAATATGCCCTATGTGTTGTGGAGAAACTTTCAACAATTCTGAGTCTCTTAAGTATCATTTATTAAGTATGACAGATAATCTGTACTGTCCAGGTTGCTCCTTAAGGACTTACTCAGTAGCTGCATTGATTCAACATTTAGATTGTTGTGGAAAGGAAATTGATCAAGAAGATCATGAAAAAGATACAGAATTACGCCTTAATAAGTTAGAGGTTGAAGGTCATGTTCATGAAGGAACTGATATCCTTATGGATGAAAATGATGATGCCATTAATGATAGTTTTTTAGCAACTGTTAATGAAGATGGAATAATGATTGTTAGTGAAGGTAGAACAATTCAAGTTGATGAAAATGGTGATATTCAAGTTTTAGAAAAGTCAAATGTGACAAGTGAGGAAGAGTCTATGTCTCTTGTAAATTGCGAAAAAGACATAGTTAATACAGAGGGAGAAATTCAGCTTGCTGATTCTTCTAATTCACTACAGCATAGTAACTTAATAAATGATGTCAAAAAAGATGACCCTTTGCCAAGCATAGTTGATAATTCTGAATTATTAAATGAAGATGAAACTACATTAATTTGTATGACTCAAGTTGAAGATATGCAATTTGATGATTGTGATATTCTTAAAATTAAAAAAGAATGTAATGAAACATTAAAAAAGGAACAGCAGGAGTCAGATATAATGTACAGTTGTAGTACTTGTAACGTTAGCTTTAGTTCCGTATTAGATCACATAAAGAAATATCATGATGGGCAAGAAGTTGTACTAGAAATGGCTGAACAGCAAATAGATGAAATACAATCCACAAGACCAGAAACCATTCTACCACCTGCAGTTATTACAAGTACACCAATACAGATGACAAATAATATTATCCAAGCAACTCCTGTACCATCAAAACAAAGACAGTTAATGAATACATTAAGAACTGAAGAATGTATTGATAGTGATGGAAGATTGTATACAAGAAAAGTTGTACAAATTGAAAGATTTTGGGATCGGACTCCAGTTACTTTATCTTCCACGAAAGCTCCAATGATTGAAAAATTTTTTTCAAACGTTGAAGGAGTCAAGGTTAGAGATAAAAGTGTAACAGTGGCTCCCACTCGAATGTACAGATGTAATCAATGTTTAGAACAATTTGCTAAATTAGGTGATTTTCGCGTACATGTGTGCCTTCAAGGAAATAATCGGTGTGATCAATGCGATCAGACTTTTGCAACAGGGAAAGCCTTACACATTCATATGAAAGTGCATGAAAATAACGACTTTCCTTCTCAAAAAATATTCTTATGCCCTGTATGTGGTACGGAATTTCTGACGCATAAAAGCTTACGGCTGCATTCGAGAATGCATGCCCCCGTCAGAGCACGGCATGTCGAAGCACCTGAAGGAACCGAAGAGGAAACATTTGTTTGCAACGAATGCGGCACAACACTTTCCGAATCGTATAGGTCGGCGCATATGTCCCTTCATGCTGGTGACACGATTACGTGTGCCGTGTGTAATCGGAAGTTTGACTCGGCCGAAAGTCTCTCGATGCACGCAGCTGTGCACACAGAGATTGGCATAAACTCGCCAAGCCCTGGCGGTGGCGGGATCGGTGCTGGCGGAACCGAGCTCAGCTTGACCACCTGTCAAAGCGGTTCCGACAATTTGTACGTGAGCAGTATCGCCACGACCACCGCGAATACACCAATCGTCGAGAGTGCAGCGGGTCAGAGCCACAAGCCGTATCAGTGTCAGCACTGTGGACGCAGGTTCACTCGACCCCACGAGAAGGTCAAGCATGAGAGAATACATACCGGGGAAAAGCCACACTCTTGCGAGGTTTGCGGGAAGAAGTTTCGGGTCTCTTACTGCCTGACTCTCCACATGCGCACTCACACGGGGGTCCGTCCTTATGAATGCCAGCACTGCGGCAAACGCTTTAAAGCTTCCTCAGTCTATAACCATCATCTACTAACGCATGGTGAGGAGAGAGCTTACACCTGCCCTTACTGTCCAAAAACCTTCAAAACTCGGGTACAGCTCGCTGGACACAAGAACAGCCACACGAAGCCCTTTCGGTGTACTGAGTGTTCGCGACCATTCGCTTCCCTCTATGCGGCCCGGGCTCACATACAAACACATAAGAAGGACAATAATTTAAAATTCAGTTGCAACGTATGCGGAGCATCATACGGCCGGGCATTTGCTCTCAAAGATCACGTAAAGCAGCACGAGCGAGAAAACACTACTGTGCCACCGGAACCTGCGCGCGAGATCGAGGTTCAGGAAGTCGATAACTTCCTCGTCCACGAGGACGAGGAGGAACTTGAAGACGAAGATTTGACCGTTAACTCAACTCCGCCCCCACAGCCGCCACCCATACCGGTTCTCCACGAGGGATGA
- Protein Sequence
- MGSINLICPMCCGETFNNSESLKYHLLSMTDNLYCPGCSLRTYSVAALIQHLDCCGKEIDQEDHEKDTELRLNKLEVEGHVHEGTDILMDENDDAINDSFLATVNEDGIMIVSEGRTIQVDENGDIQVLEKSNVTSEEESMSLVNCEKDIVNTEGEIQLADSSNSLQHSNLINDVKKDDPLPSIVDNSELLNEDETTLICMTQVEDMQFDDCDILKIKKECNETLKKEQQESDIMYSCSTCNVSFSSVLDHIKKYHDGQEVVLEMAEQQIDEIQSTRPETILPPAVITSTPIQMTNNIIQATPVPSKQRQLMNTLRTEECIDSDGRLYTRKVVQIERFWDRTPVTLSSTKAPMIEKFFSNVEGVKVRDKSVTVAPTRMYRCNQCLEQFAKLGDFRVHVCLQGNNRCDQCDQTFATGKALHIHMKVHENNDFPSQKIFLCPVCGTEFLTHKSLRLHSRMHAPVRARHVEAPEGTEEETFVCNECGTTLSESYRSAHMSLHAGDTITCAVCNRKFDSAESLSMHAAVHTEIGINSPSPGGGGIGAGGTELSLTTCQSGSDNLYVSSIATTTANTPIVESAAGQSHKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHSCEVCGKKFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCNVCGASYGRAFALKDHVKQHERENTTVPPEPAREIEVQEVDNFLVHEDEEELEDEDLTVNSTPPPQPPPIPVLHEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00304593;
- 90% Identity
- -
- 80% Identity
- -