Cfus002638.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000026.1:1789141-1792580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0033 0.34 11.6 0.9 1 23 275 297 275 297 0.95 2 12 2.2e-05 0.0023 18.4 1.2 1 23 305 327 305 327 0.98 3 12 8.1e-06 0.00082 19.8 0.7 2 23 335 356 334 356 0.97 4 12 0.00015 0.015 15.8 1.2 1 23 362 384 362 384 0.98 5 12 2.9e-05 0.003 18.1 2.2 1 23 391 413 391 413 0.98 6 12 0.00015 0.016 15.8 0.2 1 23 419 441 419 441 0.96 7 12 9.3e-06 0.00095 19.6 0.1 1 23 447 469 447 469 0.98 8 12 5.2e-07 5.3e-05 23.6 1.2 1 23 475 498 475 498 0.96 9 12 2.7e-06 0.00028 21.3 0.5 1 23 504 527 504 527 0.96 10 12 4.1e-06 0.00042 20.7 2.8 1 23 533 555 533 555 0.99 11 12 6.7e-05 0.0068 16.9 0.4 1 23 561 583 561 583 0.94 12 12 0.00027 0.028 15.0 0.2 1 23 589 613 589 613 0.94
Sequence Information
- Coding Sequence
- ATGACAGAAGATTCAGAGAAAGATGTATCACATTGCCTACTTTGTGACAACAAGACAGGACTATCGTCCAGAAATAGCATTTGTATTTTTGGAGAAAATGCAATAACTAATTCAGAAGAACCCATAATCAATATTCTTGGCTCGTTATTACAAATTACTATTAACAAAGAAAATACACATTCAGAGCTAATTTGTAAAAAATGTTTTAGGCTTATTAATGAGGCTGCAGATTTAGAATCTAAATTGTCAGAGGTTAAATTAGAAATATGTGAAATGTATAAAAGAACTTGTAGTAAATTTTTGAAATTAAATAGTAATGGGGATGAATACAATGACCATGATTATATTGATAATCCAGAAAATCCAGTTGAAACGGTAACAGTAATTAAGATTCCAGAAAAAGTTAAGGAAATAAAAAAAAAAAGTAAAAAGATAAATGCTTTAGAGACAGCGAATCAAATCGAATCTAATTTAATTAACAAAGAAGAAGTTACTAAATCTGTTGAAATAATAATAGATAATGTTAATGATAATGAGGAGCCAAGTAATAATGAACAAAGCGAAGACATTGATAATGAAGATCTTCATGATGAAGATATAGAAGTAAATTCACCGGTAAACGAATCGCAAATGGAAGAAGTAATTGTAGAAAAAAAAAGCTCTTTGAAGTCTCAAAGGATAAAGAAGGAAGAATTGCAAGAGGAGTTGGTTTTGAGGGACGGCGACAATTATATTTGCATTCTCTGCTCGGACAACGACAAAGAAAGCAGAGACGCTAAAAGTATAATCGCTCATTTAAAAGATGAGCACGATACTCGTTTATATATATGTGATATTTGCGGGGATCAATTTCGAAAAAGAACTGAATTGTCGCATCATTTGGATGATCATGTAGCAAAGGAGGAAGGCGATTTTCAATGTGAAGTATGCAATAGAATATTCAGTAATTTACGACTTTTTCGTATTCATAAACGCATTCATTATCCTCAAGTTAAGTCTTGGACATGCGAAACTTGTGGTAAACGCTATAGTTCGAAAAATTTACTCGAAGAGCATACGAATACGCATACTGGAAACCGGCCGTATATTTGCGAAATATGTGGCAAAGACTTCGCATCGAAGTACACTCATCGCGCTCATGTAAAAACTCATCAGATTAGACCGAGACCATTTGAATGCTCTCAATGTAATAAAACGTTCCTTAGCCAACAAAACTTGACGCAACACGTGAAAACACATAACGGTGTCAAAGAATACGTTTGTCAACAATGTGGAAAGGCATTTGGTTCTGTTCACAATCTTGTAGTACATAACATTGTCCACACTGGCTACAAACCTTACATTTGTCGCGTTTGCGGTAAAGCGTTCGCGCGAAAAGCAGAAATTCGTGACCACGAACGAACTCATACGGGTGAAAAGCCCTATCAATGTGAATTTTGTGGGGCTACCTTCAGCCAAAGATCAAACTTACAATCTCATAAACGGGCAACCCATTACAATGATAAGAGATATAAATGCGACGATTGCGGTAAAGGTTTCAAAAGAAGAAGATTGCTGGATTATCATATTAAAGCCGCCCACACTGGCGAGCGACCTTACAAATGTGAAACATGTACAGCAACCTTTGTGTATCCAGAACATTTTAAAAAACATATGCGAATTCATACGGGAGAGAAACCTTATTTATGCGAGGTTTGTGGGAAAGCTTTTAATAGTCGAGATAATCGTAATGCACATAGATTTATTCATAGTGATAAGAAACCGTACGAATGTTTAGTTTGTGGAATGGGTTTTATGCGAAAACCATTGCTTTATACACACATGCAAACTCAAGGCCACTTAAACGATACAATTGTTGTTAATCAACCAAGACTGACTACAGAAGACGATGTAATTATTCAAGAAAATAGAGTTCACTTAGTTATGGATGGCGATACGAATCAATTAGGTGAAAATGCACAATTAATTGTTACTGAGCTAAAAGATCATGTAATTATTCAAGAAGATGGTCAGAATGTTCTAAGTTTAGCGGAAGAAAATATGAGCGGCGAAGAAATGGATCATATTGTAGTAGATGGACAGATGTCTTTTGAAGATTCGGAGGTAATGGAATGTAAAACCGAAGTAGCCGATAATATGGAGGAAGTTTATGGGTACCAAGACGCAGATGGCAATACCATAGTCTTGCCAACGAACGCCAATATTAAAGAAATTATTGAAGATGGAAATAAAACGATGCGGTTAGTTCAAATTCGCATACCGACGGATTCCGCTGGCGACGGACGAAGTTGGTTGAGCCTAGTACAAAACTCTTGA
- Protein Sequence
- MTEDSEKDVSHCLLCDNKTGLSSRNSICIFGENAITNSEEPIINILGSLLQITINKENTHSELICKKCFRLINEAADLESKLSEVKLEICEMYKRTCSKFLKLNSNGDEYNDHDYIDNPENPVETVTVIKIPEKVKEIKKKSKKINALETANQIESNLINKEEVTKSVEIIIDNVNDNEEPSNNEQSEDIDNEDLHDEDIEVNSPVNESQMEEVIVEKKSSLKSQRIKKEELQEELVLRDGDNYICILCSDNDKESRDAKSIIAHLKDEHDTRLYICDICGDQFRKRTELSHHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWTCETCGKRYSSKNLLEEHTNTHTGNRPYICEICGKDFASKYTHRAHVKTHQIRPRPFECSQCNKTFLSQQNLTQHVKTHNGVKEYVCQQCGKAFGSVHNLVVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDDVIIQENRVHLVMDGDTNQLGENAQLIVTELKDHVIIQEDGQNVLSLAEENMSGEEMDHIVVDGQMSFEDSEVMECKTEVADNMEEVYGYQDADGNTIVLPTNANIKEIIEDGNKTMRLVQIRIPTDSAGDGRSWLSLVQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305768;
- 90% Identity
- -
- 80% Identity
- -