Cfus001542.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000015.1:268259-273385[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.052 5.3 7.8 0.4 2 23 241 263 240 263 0.91 2 16 0.033 3.3 8.5 0.6 1 23 275 298 275 298 0.96 3 16 0.028 2.8 8.7 3.6 1 23 312 335 312 335 0.94 4 16 0.00014 0.014 15.9 5.8 1 23 341 363 341 364 0.95 5 16 0.14 14 6.5 0.3 3 23 371 392 369 392 0.94 6 16 0.0019 0.19 12.4 0.2 1 23 397 420 397 420 0.97 7 16 3e-07 3.1e-05 24.3 0.4 2 23 427 448 426 448 0.96 8 16 1.3e-05 0.0013 19.2 0.2 1 23 454 476 454 476 0.96 9 16 3.4e-05 0.0035 17.8 1.0 1 23 482 504 482 504 0.98 10 16 5.7e-05 0.0058 17.1 0.6 1 23 699 722 699 722 0.96 11 16 0.0021 0.21 12.2 0.3 1 23 728 751 728 751 0.97 12 16 0.002 0.21 12.3 0.1 2 23 758 780 757 780 0.92 13 16 0.0093 0.95 10.2 0.2 1 23 785 807 785 807 0.96 14 16 0.00036 0.036 14.6 0.2 3 23 815 835 813 835 0.96 15 16 0.0001 0.01 16.4 2.4 1 23 841 863 841 863 0.98 16 16 4.1e-07 4.2e-05 23.9 0.2 1 23 869 891 869 891 0.98
Sequence Information
- Coding Sequence
- ATGCGCAAGTGGCAGATCCTCGAATTCGACGGGAACCCGTACTACGCCTTCGTGCCGGAGGACGAGGAGCTGCCCATGAAGGAGGACTCGATACCCGAGCTCGAGGAGGACATCTCCCTCGCCCTCGAGGACTCGGCGTCGAGCGGTAACGAGCCGGAGGACCAGAGTCCCAAGCTCGGCGGCGTTGGAGGCGGCCACGGCGGCGACGACGGCGGCTTCGCCTACGACGAGGCGACGATCGAGCCCGAGGACTTTTACTCGGACGAGTACTCGGATGCCAAGGGGTCCGAGCTGTCCCCCGTGATCAAGCCCGTCCTCGTCAACGGCAAGCTCCATAGGCAGAACGGCACCGCCGAGCACCAGACTTACCAGGGTGACCTCTATCAGGTGAAGGTCGAAGCGGGCGTGGTCACGCTCGAGAAGCTCGACGTCGAGGCTCTGAAGACGAGTACCGAAGCGGAGGAAGAGGAGGAGATTGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCACCGACGGTCAATGTCAATGTCAATGTCGAGGGCGAGGTCGAGATCGAGGTCCCGAAGCTCGAGGGCTTATTGACCAGGAGCGATCCCGCCCTCGGTGATGTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGCGGAAGGGATCGTAATTGCCGGGGCGAGGAAGGAGGGGATTCCGTCCTCGGGTGCTCCTGCCCTGAAGTGCAAGGCCTGTTCGGAGACGTTCGAGTCGACGATGGCCTTCAGGAGACACGTCGCCTGGACGCACAAGAAGAAGGTCTGCATCCAGGAGAACGGGGCCTACATCTGCTCGGTCTGCGGCTACCGGACCCTCAAAAAGAGCCTGTTTGCCGCGCACCTGCAGCGCAAGCACGAGACCTGGTCGCGTAAGCGCCAGAACTCGACCAACGCCTTCCCCTGCGGCGCCTGCGGCTTCGTCTGCCGGTCCAAGCACTCCCTGCAGTCGCACTTCATCAGGAAGCACACCGACGATTACGAGCACCAGTGCAAGTTCTGCCCGAAGAAGTTCAAGGTCAAGGGTGACCTGACGAACCACGTGCGCTTCCATCACAAGGAGAAGCCGGTTAACTGCGACGTGTGCGGGAAGCTCTGCCTGAACAGTGGCTCCCTCTATGTGCACCAGAAGTGGGCCCACTACAAGCCCAAGTTCGAGTGCGCGATATGCAAGAGGCGGATGGTCACGCAGGAGAACCTCGACCAGCACATGATAATGCAGCACGAGAAGCGGGAGAAGATCGTCTGCGCGGAGTGCGGCAAGACCTTCAGCAAGAAGGACTCGTTCAAGAGGCACATGGCCGTCCACACGGGCAGCAAGCCCTACGTCTGCATAATATGCAACAAGCCCTTCGCGAGGAGGTCGCAGCTCAGGCAGCACCTGCTCATACACACGGGCAAGCGGCCCTTCGTGTGCGACATATGCGGCAAGGCCTTCACCCAGAAGCCGGGACTCATATGCCACAGGAAGACCCACCCTGGCACGCATCCCCCCCTGCCTGTCATGCCCATCGGCGACATCGTCAAGGAATTTACGGAGGGCTACCTGGCCGTCAATCCCCCGACGAAGAACGAGCACGGCGACGAGGAGGATCCGGACGATCCCGCCGTGGCCGACGTCGACGCGGAAGAGGACGACGAGGACGATGAGGATGAAGACGACGACGAAGGGGTGGGGGAGGTGGAGGGGGACGTTTACGACCAAGTGCTCGAACAGGAGGTGCTCGATGAAAACATAATAGACGTAAAGACGGAACAGTTCGAGAGGGTGGTCGAGGACACCCTGGGCCGAGTGACGCGGTCCTCGCGCGTCCCGTCCTCGAAGAGAGGACGTAGAGGCAAGAGGAGTCGGGGCCTGAAGATGGAGAAGCGGGCGAGGAGCCCGGAGTTGTTTAGCTTCGAGCCGATGGTGTCCGACGACCGGAAGCCGAGCGACGATCTCATCGATCTAGAGCAGCTCTACGGGGACTGGGAGCCGAGCTTCCTCAATTTCGAAGTGTTCGAGCAGCAGATGATCGAGCTGCAGAACTCGAGGGAGACGGCCGACAAGCCCCAGAGGTACACCTGCGCCGATTGCGGGGGCGTATTCAAGTACCGGCAGTCCTTACTGAAGCACATGGTGCGCAAGCACACGGAGGACTTCCGGTTCCCGTGCGCGAGCTGCGACAATAAGTTCAAGGTGAAGAGCGACCTCTACATGCACGTGCAAACGGTGCACAGCGAGGGCAGGAAGACCATGTGCGAGATCTGCGGCAGGGGCTACAAGAACGGCTTCGCCTTGAAGAAGCACGTGGCCAACGCGCACAATCACCGCTCGTTCGCTTGCGAGGTCTGCAAGCGTAAGCTTGCTACGGAGGAGTCCCTCGAGCTCCACCGGCTCCAGCATCTCGACAAGGATCGTACCGCCTGCCAGGACTGCGGCAAGATCTTCCGGAACGGCGACGTCCTCGAGAAGCACTCGAAGGTCCACACGGGCCTCCGGCCCTTCCCCTGCCACGTCTGCGGCAAGGCATTCAAGAAGGAGAACACGAGGAAGCAGCACCTCCTCACCCACACGGGCGTACGGCCCTACGTGTGCGACATATGCGGCAAGGCCTTTACCCAGAAGCCGGGACTCATTACCCACAGGAAGAAGCACCCGGGCCCGCTGCCGCCCCTCCCGGTTCTGTCCGTCGACTGCGTCATCTCCGACTTCATGAAGACCAAAGACAACGCTCCCGCGAGCTCCGACGAAGCTACCTGA
- Protein Sequence
- MRKWQILEFDGNPYYAFVPEDEELPMKEDSIPELEEDISLALEDSASSGNEPEDQSPKLGGVGGGHGGDDGGFAYDEATIEPEDFYSDEYSDAKGSELSPVIKPVLVNGKLHRQNGTAEHQTYQGDLYQVKVEAGVVTLEKLDVEALKTSTEAEEEEEIEVEEEEEEEEEAPTVNVNVNVEGEVEIEVPKLEGLLTRSDPALGDVEEEEEEEEEEEEEAEGIVIAGARKEGIPSSGAPALKCKACSETFESTMAFRRHVAWTHKKKVCIQENGAYICSVCGYRTLKKSLFAAHLQRKHETWSRKRQNSTNAFPCGACGFVCRSKHSLQSHFIRKHTDDYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPVNCDVCGKLCLNSGSLYVHQKWAHYKPKFECAICKRRMVTQENLDQHMIMQHEKREKIVCAECGKTFSKKDSFKRHMAVHTGSKPYVCIICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGTHPPLPVMPIGDIVKEFTEGYLAVNPPTKNEHGDEEDPDDPAVADVDAEEDDEDDEDEDDDEGVGEVEGDVYDQVLEQEVLDENIIDVKTEQFERVVEDTLGRVTRSSRVPSSKRGRRGKRSRGLKMEKRARSPELFSFEPMVSDDRKPSDDLIDLEQLYGDWEPSFLNFEVFEQQMIELQNSRETADKPQRYTCADCGGVFKYRQSLLKHMVRKHTEDFRFPCASCDNKFKVKSDLYMHVQTVHSEGRKTMCEICGRGYKNGFALKKHVANAHNHRSFACEVCKRKLATEESLELHRLQHLDKDRTACQDCGKIFRNGDVLEKHSKVHTGLRPFPCHVCGKAFKKENTRKQHLLTHTGVRPYVCDICGKAFTQKPGLITHRKKHPGPLPPLPVLSVDCVISDFMKTKDNAPASSDEAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -