Basic Information

Gene Symbol
lov
Assembly
GCA_018883505.1
Location
RCIC01000029.1:2012478-2015153[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.9e-18 1.4e-14 53.6 0.0 1 44 385 428 385 429 0.96

Sequence Information

Coding Sequence
ATGTCGAGCGCCCCGGAGAGTCCTGACGAAATGGCCCTGCAGTCGCATTACTCTCTTAGATGGAACAATCACCAGGCGCATATATTGCAAGCCTTCGAGGCGTTGCTGCACGCCGAGATACTCGTCGACGTGACCCTCGTCTGTGCCGAGACAAGCCTTAGAGCCCATAAGGTTGTGCTCAGCGTCTGCAGCCCGTTCTTCGAGCGCATCTTCGCGGAGCATCCATGTAAACATCCCGTGATCGTACTTAAGGACTTTCCGGGTCGCGAGATCGCCGCCCTTATCGACTTCATGTACCGGGGCGAGGTACGCGTCGGCCGCGAGGAGCTCTCGGGCCTCATGCACGCAGCCGAGAGCCTTCAGATCAGGGGACTGGCTTCCTCGGAGCCGCGACCTGCGAGTCCACCCTCGACCCCTAACACAGATCTTCTAATGGATGAGCCCTCGACACCCGAGGGAGCCCGACAGATGTTACTCGACGGTCCAACTCCCGAGGACGATGAGGAGAACGCCGCGGAACAAGCTCTCCGTACCACGATGCCCCTGTCTCTCCAGCCCCGCGATCTTAGACCCAACCAAATACCCAATCAAGCGGCTTTTGGTCTTCGGGAATTAAGGGAGAGCTGCAGCTCGCCTCTCATGCCCAGAAGGAAACAGGCCAGGCCGAGGCGGAGGTCTGGGGAGCTCGTTCCCCAAGATCTCAGTCGGCCCCATCCCCCGACGAGTCTCAGCCCCCCCCAGGAGGATATGGCCGAGAATCTCTCGATGAAAAAGGAACCAAAACGCTCGATATCGCCCCTCACGGCCAACGAGCGACTCGTTAAGTCGGAAAGCGAGGCCGCCAGTAGCCCACGAGGCTCGCCCTTGACCGGTACCAGCCTCCACCCAGACGCCTCCTTCTCGGACCTGCCGGCCCCAGGGCTCACCGCTATGTCCGCTCTAGCCCTCACGCCACCCCACCACCACGGGAGCGAGTACCTGACCAGTCTCGGACAGTTCGCTGCGCAGTGGCTGCCCCCTGGTCAGTCCGGGCAGTCGGGTCAGGCCCGCGACGGGAGCCCACTTGGGAAGCCACCGAGCAGCTTCCCTTATCAGCAAAGCGAGCCCAAGGGCCAGCACAGCGCTCCTCGAGGCGGTCCGCCTCGCTCCTGGACGAACGCCGACCTCACGGAGGCCCTGACCATGGTCTGGAACAAAAAGATGACCACCTCCCAGGCGAGCCGCGTCTACGGGATCCCGTACAACAGTCTGTTAATGTACGTGCGCGGGAAGTACGGGAAGAGCCTGAAACTCGAGCAGCTGCGGAGGGACTGCACAGCGGGGGAGGTCATGAACTCGTTGAACAACAACGTGAAACCGATCGAGGCCCCGGGGCTGGGTCTAGCTCATCCCGGTCACGGTCACCCGGGGCATCCCTCGGAAGCCGAAGCCAACTTTGCCCATCATCCACTGTTGAGCGGCGGCCTCGCCCAGGGCTTCTTCCCGGACTTTGGCGGCTTCCCCGTTCCCGTGAACATGGTCCATCTACTGCCACCGAGCGAGCAAAAGACTTTCGAGGGACCGGGCAAGGCCCAGAGTAGCAACGGACCCAGCAACGGACATCAGGGCCACCGTCCAGACGAGCTTCTACTTGGGACCCGGAGCAGAAGCCCGAGTCCCTCGCCGATCGATGCCTCGGGGACGGGCCTCCGGGAGGCGCCCGCGATCCTCCAACAGAACGGTTCCGACTGA
Protein Sequence
MSSAPESPDEMALQSHYSLRWNNHQAHILQAFEALLHAEILVDVTLVCAETSLRAHKVVLSVCSPFFERIFAEHPCKHPVIVLKDFPGREIAALIDFMYRGEVRVGREELSGLMHAAESLQIRGLASSEPRPASPPSTPNTDLLMDEPSTPEGARQMLLDGPTPEDDEENAAEQALRTTMPLSLQPRDLRPNQIPNQAAFGLRELRESCSSPLMPRRKQARPRRRSGELVPQDLSRPHPPTSLSPPQEDMAENLSMKKEPKRSISPLTANERLVKSESEAASSPRGSPLTGTSLHPDASFSDLPAPGLTAMSALALTPPHHHGSEYLTSLGQFAAQWLPPGQSGQSGQARDGSPLGKPPSSFPYQQSEPKGQHSAPRGGPPRSWTNADLTEALTMVWNKKMTTSQASRVYGIPYNSLLMYVRGKYGKSLKLEQLRRDCTAGEVMNSLNNNVKPIEAPGLGLAHPGHGHPGHPSEAEANFAHHPLLSGGLAQGFFPDFGGFPVPVNMVHLLPPSEQKTFEGPGKAQSSNGPSNGHQGHRPDELLLGTRSRSPSPSPIDASGTGLREAPAILQQNGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00305129;
90% Identity
iTF_00305129;
80% Identity
iTF_00305129;