Cfus003964.1
Basic Information
- Insect
- Ceratosolen fusciceps
- Gene Symbol
- -
- Assembly
- GCA_018883505.1
- Location
- RCIC01000001.1:6282676-6283671[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-08 5.5e-05 22.9 0.0 2 39 16 53 15 58 0.87 2 2 4.4e-14 1.1e-10 41.2 0.0 1 44 174 217 174 218 0.96
Sequence Information
- Coding Sequence
- ATGGCAACGAATTCTATAAAAAAAATCGACCGCATTAAATGGACACAAGAGGAGCTGCGTCAGGCAGTGGATGCTGTAAATCAGAGATTGTGTAATAGTAAAGCAGCGAGTGAGAGGTACGGTATTCCGCGCTCGACCTTGTTGCGCCATTTAAAATTAGGCTGCAAGGAGATGGAGCAATTAGCCGATTGCAGCAGATATCAAATTTTGGAGAATTTCGAAAAGGACTTGGAAGAGTTTCTGGTAAATTTAAAAAAGGACGATGCCAGCTGGACTTTGGCTAATCTCCGAGGGAAGGCATTTGAATTCGCAGAAAAATATAATATTAAGCATAACGTTAATAAGAAAAAACGATTGGCAAATTACAGTTGGATGAATTCGTTTATCGATAGACATCCTCGTTTGGCTATGCGTAAGGCTGTCGTTGGCGGCCTATTGTGCATCAACCAAAACAAGCCTGGCAAAACGGTTAACCAGTACCTGAAGGAGTGCATGCAGAACGCCACTCGGTGCAAGTGGACGGAGGACCAGCTCATCCAGGCTATTAATTCGGTAAAGAATGGGAGCTTCAGCTGTCGAATGGCCAGTAAGAAATTCGGAATACCCAGAACTACCTTGATTCGACACATCAAGGAGGGTACCGAGAAGAAAAAACGGTTAGGTCGTATGCCAATATTTGGTAAACTCGAAACGGAGTTGAAGGATTTTTTATTGAATAAGCAGAGTAATGGCAACAGCTGGTCCATGACTGAACTTAGAAGAATAGCATTTAATTTTGCAGAAACTCATAAGATCGAGCACAAGTTCAAGAGGGACAAAGGTCTGGCGAGCTACGAATGGGTTCACGCCTTCATGAATCGGCATCCCGAAATCAATGTACAAACGCGAAAATATGAATGCTCGACCGCGAAATTCTGTAAACTGAATAAGCTCAACGAGTTTGCTGATATGCTACAAATTATCCTAAAAGAAGGAGATGAAGACATTTTCCATTAG
- Protein Sequence
- MATNSIKKIDRIKWTQEELRQAVDAVNQRLCNSKAASERYGIPRSTLLRHLKLGCKEMEQLADCSRYQILENFEKDLEEFLVNLKKDDASWTLANLRGKAFEFAEKYNIKHNVNKKKRLANYSWMNSFIDRHPRLAMRKAVVGGLLCINQNKPGKTVNQYLKECMQNATRCKWTEDQLIQAINSVKNGSFSCRMASKKFGIPRTTLIRHIKEGTEKKKRLGRMPIFGKLETELKDFLLNKQSNGNSWSMTELRRIAFNFAETHKIEHKFKRDKGLASYEWVHAFMNRHPEINVQTRKYECSTAKFCKLNKLNEFADMLQIILKEGDEDIFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -