Ccor016511.1
Basic Information
- Insect
- Ceratosolen corneri
- Gene Symbol
- -
- Assembly
- GCA_030522565.1
- Location
- JAPYYT010007634.1:1-3572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0028 0.51 12.1 0.1 1 20 115 134 115 135 0.95 2 12 0.01 1.9 10.3 4.6 2 23 278 300 278 300 0.91 3 12 3e-05 0.0055 18.3 0.6 3 23 389 410 387 410 0.95 4 12 0.077 14 7.5 0.8 1 23 569 592 569 592 0.94 5 12 0.0016 0.3 12.8 0.0 3 23 642 663 641 663 0.90 6 12 0.0029 0.52 12.0 0.2 3 23 695 716 694 716 0.93 7 12 0.0083 1.5 10.6 3.7 2 23 760 782 759 782 0.96 8 12 0.029 5.2 8.9 2.7 3 23 797 818 795 818 0.94 9 12 1.7e-05 0.0032 19.0 0.3 2 23 863 885 863 885 0.94 10 12 3.7 6.8e+02 2.2 2.3 1 23 1010 1034 1010 1034 0.97 11 12 9.9e-05 0.018 16.6 0.0 2 23 1050 1072 1049 1072 0.94 12 12 0.012 2.1 10.1 0.5 1 23 1148 1171 1148 1171 0.98
Sequence Information
- Coding Sequence
- ATGTCGTTCAGCCAAGAGACATGCCTGCCAGATCCGGCGGAGATCGATAGCGAGGGTTCGAGCTGCGAGGAGCGAGAATCTCGCAGGCGACTGCTCGGCGACTCGGAAGGGCTGCCGAAGAAGAGGCGGAAACAGTCGACGCCCGTGAAATTCTCGACTTCGCTGAGCCTCGGCGACTGCGAGGAGTCCGAAGAGGAGTCGGCCGACATACAGGGAGTTAACAATCACGAGCGACGCGAGTTCAGTCAGCACTGCGAGCTCGAAGGTAAGCCGACGACGTCGCCGGATTCTAAGTCTGCCCAAGGCCACACGACCATCAAAGACGTCAATCTGAACAATGAGTTCCGCTGCCAGTATTGCGGCCAATTTTTCGATAGTCGCGTAGCGCTCGACGTGCACCTCGAATGCGAGCACAACCTCAGTTTCCCGTGTAATAACGCGGCGGCGGCGCACGAGCCGCGGCATAACAATGGCCTCCCCAATAGTAACGACTCGCCGAAAATGCAAGCCCAGTCGAGGCTGAGTCCGGAGGCAGTCGAGCCTGCCGAGCACTCCATCAGTCCCATCAATCTCTCGGGCATAAGCATAAGGAACTTTGCGGCGGCGAGCGCCTCCTGGCTGTCGGGGCAGGGTCAGGCACAAGGGCCGAGCGAGCCATCCTCGTTGGCCAAAATCGCCCCAAGAGGCAACAATCACTTTCAGTCGATGCCTACGGGCTTCCCGGGCCCACTCGCGCAATTTCTACCTCTGCCCGCTTTCCCCATACCCGACTCCACGCAAATTCAGCGAGCCGCTCTGGGCCAGTTCCCGAAGATATTTAATCCCGACGCGTACTGTGATCTCTGTAATAAGgaattttgtaacaaatattttctcaagACGCACAAGGCCAACAAGCACGGCATTTACGTCGACCCGCCGAGCGGCCAACCCCAAGCTGGCGAGGCTCTCGTCCCGTCTAATAGCTTTCCCTCCACCTCGAGTCCCATAAACAGCCTCCCGACAAACATGAGCCTCAAGCTAGCCGAGCAAACCCCCCGACTCCTCGATAATAACGTAATGCAGCAGCAACCACAACAGCTACCACAACAGCTAccacaacagcaacagcatcaacaacagcaacagcaacagcagcaacagcaaccaCAAGCATCTATCGCGTGTGACATCTGTCCAAAGCGGTTCAAAAATGACGATTCCTTGCGCAAGCACAAGCAAAAGATCCACACCAATCAGTGCAACGAGAGCCTCGAGTCGAGTCAACTGCATTTGACTCGGCCGTCCTCGACTTGCGACGAGGAGAGACAGAGTCCCGGAGGTATCGAGGCCCTTTTCAAACAAGAGTACAACAGCCAAGATCAAGAGGACCCTCATTACGCCCAAAGCCCTAAACTCCCCGTCATACCCTCACCACCCCTAATCAAAGACTCGGCCTTCAACGGCGAGCACTTCCACCGACTTGGCGTCATGAATCCCGAGGCTTTTTGCGAGACCTGCTGCAAGGAGTACTGCAACAAGTACTTCCTACGCACGCACAAGCTCAAGCGCCACGGCATCCTAATCGCCGACAACGACAGCAAGTCGCCGAGCAGCTCGAGCTCCGCCTCCATCACCTGGCATCACATCCAGACCAGTCCACTCAATCTCATAATGGCCGACAGCCTTGGGAATGGCTCCGAGTCCGGTGATCGGACCGAGGAGTACGCCTGCCGGTCCTGCGGCATCCGCTTCCAGACGCAGGGCCTCTATCACCTCCACGTCGAGAAGATCCACGAGAGTAACGGGGAGGAGCGGTCGCCACGAGGGGAGCTCGATGCCGAGTTGGCCGAGCAGCGAGCCGACTCCATTTCCGAGGATCTCCAGAAGCTCCAAACAATGATTCTCCAACTGAACGGCTTGGAGTCGAACAAGGCCGCCTCCTGCGCCCTCTGCGGCAAAGATTACGACACCCCGGCCGCCTTAAGGAACCACATGGTGGCCGAGCACGGCGTCATACCGGAGAATCTCTCCTCGACGCAGCCCCAGCGTGCCCCGAGCGATAAGTCATCGCCGACGGCGGCCCTCGCTCAGCTACTACTGTGCGGCCTCTGCGAGAGGGAGTTCCCTCACCAAGAGGCCCTAAGGAAACACCTGGCCGAGGACCACCAGCCACTTACGCCGACGACGAGCTCCACCGCCCAGCGGCCCTCCTCCGTCACCTCCACTCCCAAATCCAACTCCTCCCAGCAAATCGAGCAGCGCAAGGCCATCGCCTCGATCACGCCCACCTCGAGCTACTGCGAGATCTGCAACAAGGAGTTGTGCAACAAGTACTTCATGAAGACCCACATGCAGAAGATGCACGGCATCGAGATCGAGAACGGCGCCCAAATCGGCGGCGTCATCTGCAACATATGCAAGAAGGAGTTGTGCAGCAAGTACTTCCTGCGCGTCCACAAGCAGAATACCCACGGGATCGTGGAGGAGGGGGCCGGGGCCGGGAAGCAGGAGAGTTTCGAGGGGGCGCCGAGCGCGGAGGACTTGGCCCTCAAGCCGGAGCAGCTCGGCGATCTGAGTCTGCGCTACATCACCCACTTCACCGAGGTCTGTCCGATCTGCAATCGCCGCTTCCGCAGCTCCAAGTGGCTCAAGGTCCACCTGCAGGGCGAGCACGGCAAAGCCGGCATTGAAAAGTGGCGGGAAATCGAGCACTACCAGCAAGGGAGCCCCAAggccccgcccgcccgcccaccCACCCTCCCCAAGAGCGCccagcatcagcagcaacagcatcagcaacagcatcaacagcaacagcatcaacagcaacagcaacaacagcaacagcaacagcaacaacagcagcaacagcagcaacagcagcaacaacagcagcagcaacagcaaacGCACGCAAACACGAGCCTCAGGATACCGAATGGCTTCGAGCCCGCTCAGCAAATACGCAGCGACCTGGCCAGCCTCGGCAACCAGGTCCTCTCGAATTTCTTCGGCAACGCGAGCGACGACCAACCCGCCCAAAACTACCGCTGCTCCCAGCTCCACTGCAATTTCTCCACCTCCATTCTGCCCCTCTTTTTCCTGCACGAGCGGTCCCACAGCCATCAGCAGGAGAGCACACCCATGGACAACGAGCCCACCATACAATGCCCAATTTGCAATCAGGCCTTCGGCCAGCCCGAGGCCCTCCGCCAGCACATCGTGTCTCGGCACCCGAGCCCCTTCCCCGCCCTACTCTCCCAGTTCCCCATACCCCTGCTCAACGACTTCGCCCTCGGCCCCGACCACCATCCATCCCAGTACCAGGAGCGCAACGAGTACGCCGAGGCGAAGGAGCTGCCGCGGCAGCCAAGTCCCCACATCATGAACGAGATCGACACGAACAAGATGAAGAAGCAGGAGGAGAACAACGCGGTGCAGGTGATGCCCCAGGGTGCCTACAAGTGCGCCCAGTGCGGCTTCGCCACCGCCAATCTCAATCGCATCAAGAAGCACATAAGGAAGGACCACAAGAGCATCGGTGACCCCGCGGAGACGGTCCTCGCCGAGCTCACCAAGACCCTCAAGGA
- Protein Sequence
- MSFSQETCLPDPAEIDSEGSSCEERESRRRLLGDSEGLPKKRRKQSTPVKFSTSLSLGDCEESEEESADIQGVNNHERREFSQHCELEGKPTTSPDSKSAQGHTTIKDVNLNNEFRCQYCGQFFDSRVALDVHLECEHNLSFPCNNAAAAHEPRHNNGLPNSNDSPKMQAQSRLSPEAVEPAEHSISPINLSGISIRNFAAASASWLSGQGQAQGPSEPSSLAKIAPRGNNHFQSMPTGFPGPLAQFLPLPAFPIPDSTQIQRAALGQFPKIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDPPSGQPQAGEALVPSNSFPSTSSPINSLPTNMSLKLAEQTPRLLDNNVMQQQPQQLPQQLPQQQQHQQQQQQQQQQQPQASIACDICPKRFKNDDSLRKHKQKIHTNQCNESLESSQLHLTRPSSTCDEERQSPGGIEALFKQEYNSQDQEDPHYAQSPKLPVIPSPPLIKDSAFNGEHFHRLGVMNPEAFCETCCKEYCNKYFLRTHKLKRHGILIADNDSKSPSSSSSASITWHHIQTSPLNLIMADSLGNGSESGDRTEEYACRSCGIRFQTQGLYHLHVEKIHESNGEERSPRGELDAELAEQRADSISEDLQKLQTMILQLNGLESNKAASCALCGKDYDTPAALRNHMVAEHGVIPENLSSTQPQRAPSDKSSPTAALAQLLLCGLCEREFPHQEALRKHLAEDHQPLTPTTSSTAQRPSSVTSTPKSNSSQQIEQRKAIASITPTSSYCEICNKELCNKYFMKTHMQKMHGIEIENGAQIGGVICNICKKELCSKYFLRVHKQNTHGIVEEGAGAGKQESFEGAPSAEDLALKPEQLGDLSLRYITHFTEVCPICNRRFRSSKWLKVHLQGEHGKAGIEKWREIEHYQQGSPKAPPARPPTLPKSAQHQQQQHQQQHQQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTHANTSLRIPNGFEPAQQIRSDLASLGNQVLSNFFGNASDDQPAQNYRCSQLHCNFSTSILPLFFLHERSHSHQQESTPMDNEPTIQCPICNQAFGQPEALRQHIVSRHPSPFPALLSQFPIPLLNDFALGPDHHPSQYQERNEYAEAKELPRQPSPHIMNEIDTNKMKKQEENNAVQVMPQGAYKCAQCGFATANLNRIKKHIRKDHKSIGDPAETVLAELTKTLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -