Ccor008925.1
Basic Information
- Insect
- Ceratosolen corneri
- Gene Symbol
- -
- Assembly
- GCA_030522565.1
- Location
- JAPYYT010001958.1:30318-32462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.5 92 5.0 0.1 1 21 301 321 301 324 0.89 2 10 0.061 11 7.8 3.5 1 23 331 353 331 353 0.98 3 10 0.0022 0.41 12.4 4.4 1 20 359 378 359 381 0.95 4 10 1.7e-05 0.0032 19.0 0.7 1 23 387 409 387 409 0.97 5 10 4.5e-06 0.00082 20.8 3.3 1 23 415 437 415 437 0.98 6 10 2.1e-05 0.0038 18.7 1.2 1 23 448 470 448 470 0.98 7 10 4.3e-08 7.8e-06 27.2 0.9 1 23 476 498 476 498 0.99 8 10 2.7e-06 0.00049 21.6 0.6 1 23 504 526 504 526 0.95 9 10 1.1e-05 0.0021 19.6 0.1 1 23 532 554 532 554 0.93 10 10 0.0001 0.019 16.6 0.2 1 23 560 582 560 582 0.98
Sequence Information
- Coding Sequence
- ATGAATTGGGAAATTAGTTGGGCAGATATGTGTCGAGCATGCATGGAAGTTGAAGGTGTTTTACTTCCTTTGTATGACGATGATGATATCAATGATAACGATTTACCAAGTAAACTGGCCGAATTGACTTCGATTCagGTAAGCAAATGCGATGGCTTACCAACGAAGCTTTGTGCCAAATGTGCTTACAGGACGAATGCattctttgaatttaaatacttgGTTCAAGAGTCGGATAAAAAGCTAAGGCATATGTTTAACGAGCAAATAATTCCTGACGAGAAGGAGGACGAGGTCGATGAGAAAATGGATAAAATGGGTTATATCGAatccaaaatattattacaagaagaCTGCCATTATATTCATGAGCAGAAGAATAATTTGCACCCTGATCGGAATAACAGAATTTCAAATGCAGAATTGAAAGAAGAGAAGGATAGTGTTACGAATGATGTGGAAAAGGTCAGCgaagaaattattgtaaaagtagaAGAGAATGTAAATGACACAAATTTGAATGATGAGATACACATTGTATTTCATTcgaatgaatttaatacaattaatactaCTGCTAATGAAGTCAAGTTCGTCGAAGAGCGAAGCAATTATGACTTTCAACAGCCAGCTACGTCGCTTACTGATACTAAGGAAGTAGAAAATGGAATGCATATTCGAGCCAATGGTCAAAGCGTTAATGACACTTTGGAGGTTGCTGATGAATCGACCCTAGAAAACCAAATTTATAATGGTTCGCATTTAGATAGTAATAAGCAAGAGGATGATGATACTGATGACTCCGATTTTTATGTGGATTCGAAAGAATATATCGTAGGTAGTATTAACGACACTATAACGAAAGTTAAGGAAATCAAAGACGATGGGAAAGTTGTGCAATATCAATGCACGCTTTGTTTGCAAAATTACTCGGTACTTTCGCAAGCCTTAAGTCACATAGTTGATCTACATGTGCCAAGTACTGGGCCGTTTTATTGCGTTGTTTGCGAAATGGATTGCGATAGTATTAAACATTTGAAGACGCACGTGAAAACGCACAAGGGTCCGACTCCTTATTCGTGCTTTCTTTGCAATAAATCGTACGTAATGAAAAGATATCTCAAGCGACATATGGCTTGTCACACAGATTTTCCTCGACACCGCTGTGCCAAATGTGGCGTGCGATTTAAAGTTAAAAGTGAACTGGAAGAGCATATTTTATCGCACAGCCAAGGAGCGCCATTTAGATGCAGTCAATGCCCGCGAGTATTCAATCACAAAGGCAATTACAAGCGCCACTTAATTTCCCATCTTGATCCTCAAGGACTGCATTTACCCAAATACCCTTGCAACGTCTGCAATAGAAGATTTTTGAACAATCGCACTTTAACAACACATATGAGGGTTCATACCGGAGAGAAGCCTTACAAGTGTGTCATATGCAACAAGTCATTTTCACAGCAAGGCAATCTTCTTAATCATCAAAAGATCCATACGAATCCACGGAGTTTTACATGCGAGGTGTGTGGGAAAAGTTTTAATCAAAAGGCAACATTGAGAGATCACAGTTTGCTACACTCTGGAGAAAAACCTTATGTGTGCACTGTGTGTGGAATAGCGTTTACATTTAGTGCTGCTCTTCGTCGTCACATGTGGACTCACAGCGATGGGAAGCCATTCGAATGCGACGTTTGTAGTGCCAAATTTATTGGAAGGTACGATCTGAGGCGTCATGTGAAAATACACAATGGTAGACCGAAATTCAAACGTAGTAAATCTAAGAAAGCAAGGGAAGTGAGCGCTACCCTAGTTCCAGAAGAAATCATCAACATTGTTCCGGAGCAAGCCAATTCGGACACTATTTTTGTCGAACAAATTTTCCTATGCGACGAGTCCATACAAATTATATCACAAGAAGACTCTGAGAAGGAGAACGTCGATTCATTACTTAGTCTCATACAGTATACGTAA
- Protein Sequence
- MNWEISWADMCRACMEVEGVLLPLYDDDDINDNDLPSKLAELTSIQVSKCDGLPTKLCAKCAYRTNAFFEFKYLVQESDKKLRHMFNEQIIPDEKEDEVDEKMDKMGYIESKILLQEDCHYIHEQKNNLHPDRNNRISNAELKEEKDSVTNDVEKVSEEIIVKVEENVNDTNLNDEIHIVFHSNEFNTINTTANEVKFVEERSNYDFQQPATSLTDTKEVENGMHIRANGQSVNDTLEVADESTLENQIYNGSHLDSNKQEDDDTDDSDFYVDSKEYIVGSINDTITKVKEIKDDGKVVQYQCTLCLQNYSVLSQALSHIVDLHVPSTGPFYCVVCEMDCDSIKHLKTHVKTHKGPTPYSCFLCNKSYVMKRYLKRHMACHTDFPRHRCAKCGVRFKVKSELEEHILSHSQGAPFRCSQCPRVFNHKGNYKRHLISHLDPQGLHLPKYPCNVCNRRFLNNRTLTTHMRVHTGEKPYKCVICNKSFSQQGNLLNHQKIHTNPRSFTCEVCGKSFNQKATLRDHSLLHSGEKPYVCTVCGIAFTFSAALRRHMWTHSDGKPFECDVCSAKFIGRYDLRRHVKIHNGRPKFKRSKSKKAREVSATLVPEEIINIVPEQANSDTIFVEQIFLCDESIQIISQEDSEKENVDSLLSLIQYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305783;
- 90% Identity
- -
- 80% Identity
- -