Ccor019958.1
Basic Information
- Insect
- Ceratosolen corneri
- Gene Symbol
- -
- Assembly
- GCA_030522565.1
- Location
- JAPYYT010012047.1:1-569[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-05 0.22 12.4 0.0 28 45 1 19 1 19 0.96 2 2 5.2e-20 2e-16 60.6 0.0 1 42 26 68 26 70 0.97
Sequence Information
- Coding Sequence
- ATACCCACTGGGACGCTATACGGGCGCTGCAAGAGGGAGGGCATCGAGCTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCCATGACAGAGGCTCTCGAGGCTGTCAGGTTGGGACACATGAGTATTAATCAGGCGGCGATCCATTACAACCTGCCCTACTCGTCCTTATACGGACGTTTCAAGCGCGGCAAATACGAGGAGCCGGTTGTCAATGAGATGTCGCAGGACGGCTCGTCGCAGCATTTCCACCAGAGTCCGACTCAAAATCACTCATCCTCCCTTCCCGACCAAATGCCGTACCAGGGCAGCTGA
- Protein Sequence
- IPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVNEMSQDGSSQHFHQSPTQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -