Ccor024948.1
Basic Information
- Insect
- Ceratosolen corneri
- Gene Symbol
- -
- Assembly
- GCA_030522565.1
- Location
- JAPYYT010020229.1:1-1697[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-13 9.3e-10 39.2 0.0 1 39 98 137 98 141 0.90 2 3 2e-12 7.6e-09 36.3 0.0 2 39 153 190 152 193 0.94 3 3 2.7e-19 1e-15 58.3 0.0 2 45 208 252 207 252 0.97
Sequence Information
- Coding Sequence
- ATGTCTCACCTGCGCCCTCCTATTGCAGACATCCAGAGCTGCGACAGCGTGAAGATAAAGTTCGAGACGCTGCACACGATGGACTCGTCGGATACGATCGACATCGACAGCCACATGTCCGACCGGGCGAGCGTAAGCTCCAAGAACGCCGACGACAACATGATGATGATCACCCCCGAGCTTCTGGGCCTGATGCCCTCCGGGAGCTCCGTCCACTCGGACTCGGGCGAGAACAACTCGCGCAGCCACTCCGGGCAGTCCGGCTCCCATCACCACGGCTCCAAGTCCTGGACGCAGGAGGACATGGACGCGGCACTCGAGGCCCTCAGGAACCACGACATGAGCCTCACGAAAGCTTCCGCGACGTTCGGCATACCCTCAACGACGCTATGGCAGCGGGCGCATCGCCTGGGCATCGACACGCCAAAGAAGGACGGCCCGACCAAGTCGTGGAGCGACGAAAGCCTCAACAACGCCCTGGACGCACTGCGCACCGGCACGATCTCGGCCAACAAGGCCTCCAAGGCCTTCGGCATACCCTCGAGCACGCTGTACAAGATCGCGAGGCGGGAGGGTATAAGGTTGGCCGCGCCTTTCAACGCGAGCCCGACGACTTGGTCGCCGGCGGACCTCGACAGGGCGCTCGAGGCCATCAGGTCCGGCCAGACCTCGGTCCAGCGCGCCTCCACCGAGTTCGGCATACCCACTGGGACGCTATACGGGCGCTGCAAGAGGGAGGGCATCGAGCTCAGCAGGAGCAACCCCACGCCCTGGAGCGAGGACGCCATGACAGAGGC
- Protein Sequence
- MSHLRPPIADIQSCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNADDNMMMITPELLGLMPSGSSVHSDSGENNSRSHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -