Basic Information

Gene Symbol
Arid4b
Assembly
GCA_030522565.1
Location
JAPYYT010000110.1:75740-86626[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.3e-28 1.1e-24 87.8 0.2 1 89 312 399 312 399 0.95
2 2 9 4.2e+04 -4.6 1.8 60 60 1922 1922 1887 1954 0.50

Sequence Information

Coding Sequence
ATGTCTTGTAATGTTTTGCAGGGGGACGATCCACCTTATTTGTCGGTGGGCACTGAAGTTAGTGCCAAGTATAAGGGCGCCTTCTGTGAGGCAAAGATTAGAAAGGTCGTGCGCAGCGTCAAGTGTAGAGTAACTTATAAGCAAGGCTTGGGTACAGCCACTGTCACTGATGAGCAGATCAAAGGAACTTTGAGAGTTGGTGCTACCGTTGATGCTAGACACAACGATAGGAAGGAATTTGTTGAGGCCACTATTACAAAGATTCAAGACTGTAGTCAGTATACTGTTGTATTTGATGATGGAGATATTACAACATTGAGAAGAACAGCCTTGTGTCTCAAAAGTGGAAGACACTTTGCGGAAAGTGAAACATTGGATCAGCTGCCACTTACACATCCAGAACATTTTGGAAATCCTGTTATTGGTGGAAGACGAGGACGAAGATCCAGACAAACTCAAGATGACAGTAGTGATGATGAAGAAGATCCTCCAAGAGGTAGCAATGATTCAGGATCTGGATCTGGAGGAAAAGAAGGACCAGAGACAGAACCAGAAATTGGCAGGGTGGTATGTGTGGAACTtggagataaaaagaaaaaagataactGGTTCCCCGGATTAGTTGTTGCTCCAACTGCTCAAGACACTGTTAGAATTAGAGTTCGTGATGATTACCTTGTGAGATCATTTAAAGATGCTAGATAttatacAGTGCCAAAAAAAGAAGCCACAGAATTTACCAAAGAATTGGTCAATAAAGTGGAAAATAGTGCTTTAAAAGTAGCTGTGGAAaaggctttattatttttagagaaAAATGATTTACCTCCTCATTGGGATCGAGATTCGTTATTTGGAAATTCAGTATCAAGTGGAAACAGTGACTCAGATGGAGAACTTGACACAGatAGCTCAGATGATGAACCTCGAGAGGAGAAAGATCATTTTGTCGcacagttatataaatttatggatGATCGTGGCACACCCATTAATAATTGTCCCATGATCGGCAATGAAGACATTGATTTGTACAGGTTGTTTCGTGCTGTATATAAACTCGGTGGTTACAATCGTGTAACCAATCAGAACCAATGGAAATTGATAACACGGCGTCTTAATTTCTCAATGCATAATAGCTCATCCACCCACAATTTAGTGAAACAAGCATATAAAAAATTCCTTCATTCCTTTGAAGACTTTTATAGGAAGTTGGGTTGTACAATGGTGAATCATCCAAGAGGCAGTATAAGAAAACAACGCCCAGGTCGCAGTTTGATCCGCGATAAAGACCGAAATACTCCAGTGCCAACTCAAGAAAAAGCAATTGTAAAAACAGAAAAGGAggaagaggaaaaagaaaagaagagtaCTGGAGTGGCTGATGAAGAAATTAAGAAGGAGAAACGAGATATTAAAAAGGAACCAGTGCCTAAAGAGGAAGAACAAGCAGTACAAGTAAAAGCAAAACGGAAAGAGGAGCCAGCAGAAGAGAGTGCCAGTGGCCAAGATAGTGATGTTAACATCGAAGGTGAAGAGTCTTCAAGTAGCGAAAAATCTCAGAAAAGTATGACAAGATTGACCCCGTCAAGTGGCATTGGAAATAAATCTAAAGCTGCATCTATGACTAACATCTCTGCTAAGAATAAGGAAGAAACATCAAAGAAAAAAGCTGTCCCAGAGAAGAAGAAAACTGAGACGAAAAAGcaagaaaagaaggaaaatgaGAAGATCAAAGAGGAGGACAGTACAAAGACGAGATCAAAGTCCAAGGAAgatataatgaaagtaaataaatcgaACCCTTCATTAGAGACTCGGGAGATAAGAACACCCTCAAGAGAGTCTGACAAAAAAGTTTTCACAAAGCAAAGGAGAATGACAGATGAAGAACTGAAAAAGCGAGGGAGAAAGAAGAAGGAGGTAGATGGTGAAAAGGTACGGGTATTCGAGGAGCGATCGGTTGAGTATGCACCTAGTTATAAAGGACCTGTTGAAATTGGCGACAGGCTTAAAGTATATTATGGACCGACCCACGAATCTAAAGTTACTTATGAAGCTAAGGTTATTGATATGGAGAAAGATGGTACGGAAGCTGTATACTTGGTTCACTACACTGGGTGGAACACCAGATACGACGAATGGATAAAGGGTTCTCGGATTGCTCAAAACTTCACCCAAGCTCAAGGTCGAGTAAAGCGTACGAAGGCAACTCCTCGTCCGCAAACTCCAAGCACAAGCTCTATCACGATAACCAAGTCCTCGAAAACAGCGACGGCGCCGAACGCGGGTACCGGGGCGGCTTCATCCGCAGTTGCCCAGAATCGTCGTCGAGCACATAGTGTCGCACCTGCAGGTGGAACTAGCTCTGCCCAATCGAACAAAGAATTGCGCAAAGAGGATCGCGAGGGCACACCGGTAATCCGTTCGACAACACCCTCACCTCTCACCTCCTGCATCCTACGTACAAAAAGCCCTGCGATGACTACAAGTAATAGGACAACGCGATTGACGCGAAACACCGACACGACCTCGACGAACGAACTGCCGAGGCGCACACGACGGACCTCTGGTCACGTCGATGCGACTGTTGTCGAGGGGTCAGAAAGCGAGGACACGGACACGCTTGAGTCGGATGTGAGTGCGGAACCGGAGGCGACTCAAGCACCCTTGAGGTCGCGAATGAAAGGCGTGCAGGAGAGAAACCGACGGGAAGCACGACGTCGAGCTGAAAGCCGCATGAAAATTGACGAGACAAGCGACGCCGAGGCAGAAAAAGATACAGAGGAGCCGCGAAGAGGCAGAAGGTTGAGAAAGACCATCGGAAAGATGCAAGAGGTCAAATACGAGCCGGAAAGCGATGAAGAACAGCCTAAGGGTAGGGATTTTGATCTTAATCAAATTAGGTCGGAACTTAAAGGTTTCGATAAGGCTGTCAAATTGGAGATCACGAGTATTGGACCGGATCCAGAAGAGGAGGAACGACCGATTGTACCTGTCAAACAGGAAAAGCTTGAGACGGATAATCTCGCGGACAAAAAGATAATTTTGGAACCTGAAAAAAAGCGTGAAATTCCAAAGGTCGAATcacaaaataatacttttataaaaggaGAATCCACTAAAGTTGAAACAACTCAATCAGAAAATACCGAGGATATTTACGAATTTAAAGAACCTGAACCGTTCGAATTTGAGGTGCGCAATAAGCGAGATTCAGGAGATAAGGATAAGGTAAAGAAACGTGTGTTTGAAGAAGAATTGAAGAGTCCAAAGAAGCGTCAAAAAACATTCAGTACTACAATCACTTCAGCGAAGACAGAATTAAAATCAGATAGTAGCCCAACGGAAAACACAGATATAAAGAAAAAGCCTCGCAAAATATTCAAGAAGAATGAGGAAACGGAAGAAGCTGATATAGAAAGCGAAGATACTTCGCCTGCAACTAAGGAACTTTCCAAGTTCTTTCCGACAAATTACAGTGGAGTAGTAGTTTTCAAGCGAAAGGGTGCCTTTACTAATGCTGTGCGAAATGTTGACGATTCCTTTACTGACGACACCGTTCCTACTGATAATTTGACTGAAGACaaggataaattgaaaaaaattattatagtagaaGAAGAGAACAACAAAAGTCCAAAGAAAAGGCAGCCAAAGACTTTCACTTGCGCCGGTGCAACTAAGACTAGTGAACCGAAAATTGAATCCTCTACTTTTGAGAACTTTGACGGGAAAaagaaattacgtaaaatattcaACAAGAGAACGGAAGAAATGGAAAATAACGAAGATGGTGAAGACTGCAACAAGGAACTCAccaaattttttccaaatttcgTGGCTACGAGAGTTTCACCGCGAAAAGACACTTATGCAAACAAAATGGCAATAGAAATTGATGGTACTGACGACAATACATTCGGCGATAATAACGAAAAAACTAAGAAAATCACGGATGAGGATGTAGTGAAAAATCAGAAAAAGAGACAAAAGCTTTTCGGAGCTAATGCTACCGATGCTATcgatacaaagaaaaaaatcatacgTAGAATGGTGAGTAAGAAGACCGACGAGATTGAAGATACGGATGAAACTGAAAGCGATGAGATTGAAGAGTCGACGACAATGCGGGAGCATCCCAAATATTTATCCCACTATTCTGGTCCGAAGACGAAAGCGACAGTCGCCAATGTCAATGACACCACAAGTCCACAAGATCGCcttaatataacaaaaacagAGATTCAAGTAGGTGAACCTTCCAAATTATTTGCGATCTCTGGTAATGTATCGTTGAATAGCGATAAGGACGAGACGAAATTTAAACCGGGTGAAGTAATTGCGATCTTACCATTATCATCACTCGATACCAAACAAGGTTCAGCTGGTGCTGATAAGAAGTCTCTGCCAGGCAAAAGTGATATAAAGCAGGAACTGAAACCACTGGATTTCATGCCTATTGTTACCCATGCATTATCCGTTCCAGCTCCAATTAATGCTAGACTACCAGCTACAGCGAGCATCGAAGAAAAACTTTCGGCTGCTGCGGTATTTCGCAGCAAGCTCAAAGATATAAAAAAGGATGATGATTTGGAAACAACATTGAGGAAAACcgttaaagataatataaaaaagtcgGAAGCTGCATTCATAAAGAAGACAAAGGATGATACCAAAATTAAGCTTGAACCTGATAAGAAGAAACAACAATCCGTGGACCAAAATGTTATTAAGAAAGATCCGTTGCAGGAGATGGAATTGCGCAAAGATCCGTTACTGGAGGttatgaagaaaaaagaagaagagttTAAAGCTTCTGTGAATGCCACGATCGCAACGAACATAGCTACTGTAAGTAAGACGTATGGTGGACAAAAAAAGGAAATCGTGACGAAGATCGAGGAAACTTGGAAAAAAGCAGCAGCCGCTGCAGTAGCAGCGAATACAGTAACAACCTGTGCTAGTGTAGAAGAACTCGTGTGTGAATTTGCGCCCGCTGAAACTAACAAGGACTATGTTATAGTGCATAAGGAAACAATTGTCAATAAGATTAAATCAAGTATTGATCGAGACTCGATCGACTCAACCGACAGTAGCGATTCGGAAAGGCGACTCACTATCATCGACAGCGAAGACTTCCCAGATGACAAATGTAACGAGTCCAGTTCTGATCTGAAGATTAAGACAGTATCGTCAGTGAGCACCGCTCCGTTTAATTGCATAACGCAGCAAGAGTACGCAAATGATCTGAATCAACAGATTGGCGTCATCGGTGTTGTCGGAGCCCTGATGCAGACCAAAAACGTAAAAATGGAAGAAGACGGGGAAAACTTGAACTCGCTCTTATGTGAAGAGGAAATACCTGGTTCGCCAACTCCCGGCTCCGACCCTATAGAGCAAGAGCATAGGACTGTTAGCACGCAAAATCTTATTAAGACGGATATCGGGAGTAAAGTTGCCGTTGCATTTGTTGCCGCACAAATGCCACTGAGTACTATAGCATCGTCGACTCAATTAGCAAATTGTGCCATGATAGCAACGATGAGCGGTGGTGTTCCAATACCTCAGAGCACTAATAGCCTTGTCACTGTTTCAATGACTGTTCAACATGCCAATGTTCAACCAGTGCGACAGCCACAACCTCAAGTGCAACCACAATCGCAACAACTGCAtcagcaacatcagcagcaacaacagcaacagcaacaagtGTCTCAAATGCAACCACAGATTCAGTCGCTATCGCAGATTCAGCATCAACAGCAACTGCATCATCCACAACAACAGCAATTACATCATCATCAACAACAACACCAGCAGCAACAAATACTACATCATCATCAACAACATCTGCATCAGCATCAACGGCACGAACAGCATGAACAGGCAGTGGCCGTCGTGGCTGCGGCAGCAGCGATACCAGTAGTACCAGCGTTGCACCGTAGAGAGAGTAATGAGGCTGCGCCAGTAATGGACAATACCCCGCCGACAACACCTGACTCCAGCATATCCAACATTTCTGGCTCGCCGAGAGACGAGAGGACGGGAGGCCTGACACCTTCCTCTTCTGAGGACAATAATTCTAAAATGAACCGCGATAGCTCCGAAGCTGAAAATGACAGTGGTGGTAAGGGGCCAGGTTTTAGTGAAGACGACGGCTTGGCTGTCGTCAACTCAGAGCACGGAGTTAATGGCGGCGGTGCCAGTGTATCAACTTCCACCTCTGCTTCCATTGCCTGCGATAGGATATCCAAAATTCCAGCTAAACGCTCTCTCGTTGAAATCGAGGGTGCCTCTCCAAAAAAGCGTAAAAAGCGAAAGGAACCGGAGAGCAGTTCAATGAGCAATCAGAATAGCTCTTCTGGAAAGAAGTCGCCGAGACAGAGCACCCGCAATGCTAGACATGGCACCGGTAGCGACAGCGACGATACCAGCGAGGGTTCGAACCTCTGTGGGAACAATCCCACATTGCAGACAAGTATCGCGACAGCGCCCGGAGTTGGGACTGCAACCGGGACTAATAATTCCCTCCCTGGCATCAACAACCCCGGCAATACAGATCTTGGGATTTTCGCAGCGGGCTCGCCTAGGCCAACCAAATACAACTTCCTCATTGAATTAGaTCCTGATTTAGACGGAAGTCAAAGGATAGCAGCCTTACAACAGAAACTTACGGAACTACGTAATACTTATAATTCTGTAAAAGTAGAACTTGCTGGTATTGAAAGGCGTAggaaaaagttaaaaagaagAGAGCGAGAAGCACAAAAAGCGGCAAAGGCTGAAATGCAACAGGCATGCTCGTGA
Protein Sequence
MSCNVLQGDDPPYLSVGTEVSAKYKGAFCEAKIRKVVRSVKCRVTYKQGLGTATVTDEQIKGTLRVGATVDARHNDRKEFVEATITKIQDCSQYTVVFDDGDITTLRRTALCLKSGRHFAESETLDQLPLTHPEHFGNPVIGGRRGRRSRQTQDDSSDDEEDPPRGSNDSGSGSGGKEGPETEPEIGRVVCVELGDKKKKDNWFPGLVVAPTAQDTVRIRVRDDYLVRSFKDARYYTVPKKEATEFTKELVNKVENSALKVAVEKALLFLEKNDLPPHWDRDSLFGNSVSSGNSDSDGELDTDSSDDEPREEKDHFVAQLYKFMDDRGTPINNCPMIGNEDIDLYRLFRAVYKLGGYNRVTNQNQWKLITRRLNFSMHNSSSTHNLVKQAYKKFLHSFEDFYRKLGCTMVNHPRGSIRKQRPGRSLIRDKDRNTPVPTQEKAIVKTEKEEEEKEKKSTGVADEEIKKEKRDIKKEPVPKEEEQAVQVKAKRKEEPAEESASGQDSDVNIEGEESSSSEKSQKSMTRLTPSSGIGNKSKAASMTNISAKNKEETSKKKAVPEKKKTETKKQEKKENEKIKEEDSTKTRSKSKEDIMKVNKSNPSLETREIRTPSRESDKKVFTKQRRMTDEELKKRGRKKKEVDGEKVRVFEERSVEYAPSYKGPVEIGDRLKVYYGPTHESKVTYEAKVIDMEKDGTEAVYLVHYTGWNTRYDEWIKGSRIAQNFTQAQGRVKRTKATPRPQTPSTSSITITKSSKTATAPNAGTGAASSAVAQNRRRAHSVAPAGGTSSAQSNKELRKEDREGTPVIRSTTPSPLTSCILRTKSPAMTTSNRTTRLTRNTDTTSTNELPRRTRRTSGHVDATVVEGSESEDTDTLESDVSAEPEATQAPLRSRMKGVQERNRREARRRAESRMKIDETSDAEAEKDTEEPRRGRRLRKTIGKMQEVKYEPESDEEQPKGRDFDLNQIRSELKGFDKAVKLEITSIGPDPEEEERPIVPVKQEKLETDNLADKKIILEPEKKREIPKVESQNNTFIKGESTKVETTQSENTEDIYEFKEPEPFEFEVRNKRDSGDKDKVKKRVFEEELKSPKKRQKTFSTTITSAKTELKSDSSPTENTDIKKKPRKIFKKNEETEEADIESEDTSPATKELSKFFPTNYSGVVVFKRKGAFTNAVRNVDDSFTDDTVPTDNLTEDKDKLKKIIIVEEENNKSPKKRQPKTFTCAGATKTSEPKIESSTFENFDGKKKLRKIFNKRTEEMENNEDGEDCNKELTKFFPNFVATRVSPRKDTYANKMAIEIDGTDDNTFGDNNEKTKKITDEDVVKNQKKRQKLFGANATDAIDTKKKIIRRMVSKKTDEIEDTDETESDEIEESTTMREHPKYLSHYSGPKTKATVANVNDTTSPQDRLNITKTEIQVGEPSKLFAISGNVSLNSDKDETKFKPGEVIAILPLSSLDTKQGSAGADKKSLPGKSDIKQELKPLDFMPIVTHALSVPAPINARLPATASIEEKLSAAAVFRSKLKDIKKDDDLETTLRKTVKDNIKKSEAAFIKKTKDDTKIKLEPDKKKQQSVDQNVIKKDPLQEMELRKDPLLEVMKKKEEEFKASVNATIATNIATVSKTYGGQKKEIVTKIEETWKKAAAAAVAANTVTTCASVEELVCEFAPAETNKDYVIVHKETIVNKIKSSIDRDSIDSTDSSDSERRLTIIDSEDFPDDKCNESSSDLKIKTVSSVSTAPFNCITQQEYANDLNQQIGVIGVVGALMQTKNVKMEEDGENLNSLLCEEEIPGSPTPGSDPIEQEHRTVSTQNLIKTDIGSKVAVAFVAAQMPLSTIASSTQLANCAMIATMSGGVPIPQSTNSLVTVSMTVQHANVQPVRQPQPQVQPQSQQLHQQHQQQQQQQQQVSQMQPQIQSLSQIQHQQQLHHPQQQQLHHHQQQHQQQQILHHHQQHLHQHQRHEQHEQAVAVVAAAAAIPVVPALHRRESNEAAPVMDNTPPTTPDSSISNISGSPRDERTGGLTPSSSEDNNSKMNRDSSEAENDSGGKGPGFSEDDGLAVVNSEHGVNGGGASVSTSTSASIACDRISKIPAKRSLVEIEGASPKKRKKRKEPESSSMSNQNSSSGKKSPRQSTRNARHGTGSDSDDTSEGSNLCGNNPTLQTSIATAPGVGTATGTNNSLPGINNPGNTDLGIFAAGSPRPTKYNFLIELDPDLDGSQRIAALQQKLTELRNTYNSVKVELAGIERRRKKLKRREREAQKAAKAEMQQACS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00305440;
90% Identity
-
80% Identity
-