Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:836516-946811[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.43 22 5.3 3.0 3 23 327 349 325 349 0.93

2 15 0.31 16 5.7 2.3 3 21 489 507 487 511 0.92

3 15 0.0014 0.069 13.1 2.4 1 23 532 555 532 555 0.93

4 15 0.018 0.89 9.6 0.8 1 23 572 595 572 595 0.96

5 15 0.0031 0.15 12.0 2.7 1 23 600 624 600 624 0.93

6 15 0.49 25 5.1 2.0 2 23 711 733 710 733 0.93

7 15 0.047 2.4 8.3 0.1 1 21 738 758 738 759 0.94

8 15 6.1 3.1e+02 1.6 0.8 1 23 781 803 781 803 0.87

9 15 0.012 0.59 10.2 2.5 2 23 815 835 814 835 0.95

10 15 2.1e-06 0.00011 22.0 1.3 1 23 841 864 841 864 0.97

11 15 0.00018 0.0093 15.9 0.8 3 23 899 919 897 919 0.92

12 15 2.1 1e+02 3.1 0.1 3 23 931 953 930 953 0.92

13 15 0.92 46 4.2 1.7 2 23 959 982 958 982 0.89

14 15 0.046 2.3 8.3 1.5 1 23 989 1011 989 1011 0.98

15 15 0.018 0.92 9.6 4.9 1 21 1017 1037 1017 1042 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.43	22	5.3	3.0	3	23	327	349	325	349	0.93
2	15	0.31	16	5.7	2.3	3	21	489	507	487	511	0.92
3	15	0.0014	0.069	13.1	2.4	1	23	532	555	532	555	0.93
4	15	0.018	0.89	9.6	0.8	1	23	572	595	572	595	0.96
5	15	0.0031	0.15	12.0	2.7	1	23	600	624	600	624	0.93
6	15	0.49	25	5.1	2.0	2	23	711	733	710	733	0.93
7	15	0.047	2.4	8.3	0.1	1	21	738	758	738	759	0.94
8	15	6.1	3.1e+02	1.6	0.8	1	23	781	803	781	803	0.87
9	15	0.012	0.59	10.2	2.5	2	23	815	835	814	835	0.95
10	15	2.1e-06	0.00011	22.0	1.3	1	23	841	864	841	864	0.97
11	15	0.00018	0.0093	15.9	0.8	3	23	899	919	897	919	0.92
12	15	2.1	1e+02	3.1	0.1	3	23	931	953	930	953	0.92
13	15	0.92	46	4.2	1.7	2	23	959	982	958	982	0.89
14	15	0.046	2.3	8.3	1.5	1	23	989	1011	989	1011	0.98
15	15	0.018	0.92	9.6	4.9	1	21	1017	1037	1017	1042	0.93

Sequence Information

Coding Sequence: ATGATCGACCCTGACTTGGACGACACACATCTCTGCATCAAATGCAAGTCCACGGTTGTCGGCCTAGAAGCTTACATCGCACATCGAAAGACGCAGTGTACCAACCTCAACAGTACCGCCGTGCGAGAGAAGAAGGATCATGCCACGCCACATGCGGATCACAACGAAATAATTTCCACGCCACGCGCACATCTCGATCACACTTACGACACATTTTCATTTACGGAACCAGAACACTTCAATAAAGAGTCAACACATGGCGGCAAGACAACCAAATCACTTGCCGACTCTTATGAGCTACCCTACGAGCTGGGCGCTGATGTCTTTTTCTCCTCATTACAGCTGCAGAGCGTACAATCGGCAGGACCCTCAACAAGTGGTAAACAGAGTTTGGGCGCACACAATCAAACGTTAACAACGCTACCGCAGCGCCAACAGAAAACCGATTCTGCTGAAAATATCGCGTCGGCTGACGGGCCATGGATGTCGGATACACACGCTGCCAGTGGCGGTAATGTGGAACAACAAACAAAGAACTACGAAGTTTATAAGCCCATAACCTACATACACGAATCACCCGAAGCTAGCGAAGAGGAAGACGATGATGTGGAAGTGGAGGGGGAGATGGATGATGACGATGAGGATTACGATCCTTTAGAGGATGCGCATGCAAGTGGCGGTAAATGGAAGCCGCCAACAATGCGACACTCACCGCCCGTGGTGCCGGAATCACATACCGGCGGCAAGTGGCGTCCAGAGCAACGACCAACATTGCATGTCGCACACGCGCAACTCACACGTATCTCACCAAACTGGGATGAGCACGTCGAAGAGCTAGACACCGTTGAGGTGCTCGAAGGCCAACATCCGCCCGTCGGGCATACTAAAGGTAAGTGGATACCAGGCACCAAAATGCAGCGCCTCGAATACAAGGAGGAAGTAGTCGAACTTGCAAAGTCGGCAAATCAAGAATATTGGTGCAATATTTGCTGTCGTCGCTTGAAGAACAAGACAAATTATGAGAACCATCTAAAAACCGGTTATCATTTGAAACGCGCCGAGCCCGAAAGACAATTGGAAAAAGCGGAGTTGGGTGATATTCTTCATGGCGAGTTGAGTAAAAGTCTGGTGATAGAGGTTGAAGAGACGAAGGCTTCCAATCGCAGTGGCTGTACCAAGAAACGCAAACGACGCGCCAACTTCATTAAATGTCAGCTCTGCAAACTCAGCATGTTGCGCCATCTAGTGGGCAAACACTTGATCTCACACTACCACTACAGACGTATGCAAAATAATCCCACGAAGTCGCTGCATATGATACTGGAGAATATACACTCTATAGTCTTACAGTCGCCGTTCCAGTGTCGGCCATGTCGCTTCTATACCAACACTGAGGAGATGTTCCTGCAACACTGGAGCTCATCAACGCATCAGGACGCTACGGAAGGACTCGGAAAGTTTTGGTGTAGCTACTGTCACTTCGAATGTGAGGATAACAATCAAATGCGACGCCACTTGCTCGGCGTCGAACATAAAGAAGTCATACTCGCCATTAACCGCTCGGTGCCGATCTGCATTAGCAAACCATTGAGCTTCGACTGTAATCGCTGTGGCGATAAGTTTCGTTACAACGCCGAACTGCGTAGACATATGTTAGACTGTCATCCGGGTAAGGAGCTGTGTGGCACCATTTCGAATGAATATCAAAACCGTTACGAATGTACAACATGCGCAGACATGTTTCGTTCGAAGATCGCATTGCAACGACACGAGAAGAACAAGCACAGcatcaataaatatttctgcTCGATATGTAAAATGGTATTCAATACGCCATGTCAGGCGCGCCGGCATCGAAAAACGTTGGTGCATCGTAAGTGCGCTGCTGAGGCGGCGAAGAGCCTAGGTGTGAGGCGGACGACGGCTGTGAAGAATGTCAATAGTTGCGGCAAATGTGATTTCATCGCCTCATCCGACGTAGAAGCCATGTTACATGAGCTCGCACACCATAAGAGCGGTGCTGATTGCAATGTGGCTAATAAAACAATCAGCAGCACCGCGTGCGCtggcaaaaacaataaactcgAGCAAAAACCAACCAAACCAAAAGTTATCGAGTTACCAAAGCTCAAATGTAAGGACTGTGTCGAGTTCTTCGACTGTAAAGAGTCGCTAAAGGAACACCGTGACGTCTCACATCCCCTACTGAGCCATGTCTGCTTGAGCTGTGGTGAGAGTTTTGCGTTGCCACAAGCATTAGGGCGTCACACACGCAACTGCCAGCCGAAAGCAAGCACATCGAAGGCTGCGGCTGAAATTAAGAAATGTGGAGAAAATAGCTTCAGCTGCGACTTGTGTGATTTCAGCGCCCCCTTTGAATCGGAGCTGATATTTCATCGTCTTCATCACACACTCGGCCCATTGAGCAAAACTCAAATTATCGAATGTCCAATTTGTTCGAAGGAGTTTCGCAAATACTCGCTCCGTTGCCATTTACGTCAGCATACAAATGAGAAGAATTTCATTTGCGAAGTCTGTGATATGAAATTTGCTCGCAGCCATAATCTTAAGGATCACATGAAGTCAGTGCATGGCGTTCCGGTGAATGAAGGGATGAGTGTTGAACTAACGACCTCGGCAAATCCGGAGCCTACGACGgctaaaaagccaaaaaaattgaGCAGCGAGTTGGCTTGCAGCTCTTGTCCCAAAACATTCAGTTCATCTTATATGCTAAAGAAGCATAGTGTGAGCCATGCCGTTTCGCCGTCGGGGAACCTCGAAAATTCATGCAAATTCGAAAACTGTAAATATGTTGCCGCAAGTGCAACTTTACTACGCGTCCATGCTGCATCACATGCCAAGGAGCAATTGAAATGCAGTGAGCCATCTTGCAGCTATGAAGGGAAGAGTTTGTTGCATTTGAAGAGGCACTCACGCACACACCTCGCTCCAACTAAATTGTATGCCTGCGACAAATGTGAATTCAAAGCGCGCATTAAAGGTCACATTAGACGTCATATGCTCACACATTCCGGCGAGAAACCCTTCCGCTGTCCACACTGCCTATTCCGCTGCAGTACCTTTGACAATCTACGCAAGCATGTGCTCAAAACAGGCAAACATCCGGGTAAATTTATATACGAATGTCAGCGCTGCGCAAAAGGCGAGCAGCAGCAGCGAAAGTCTTTCAAAACAAACTCATATGTGGAGTTTCAAGCACATAAAGCTGCAATGCATGCGCATGCTTTGGAAGAAGAGAGCAAGAGGAGCTAA
Protein Sequence: MIDPDLDDTHLCIKCKSTVVGLEAYIAHRKTQCTNLNSTAVREKKDHATPHADHNEIISTPRAHLDHTYDTFSFTEPEHFNKESTHGGKTTKSLADSYELPYELGADVFFSSLQLQSVQSAGPSTSGKQSLGAHNQTLTTLPQRQQKTDSAENIASADGPWMSDTHAASGGNVEQQTKNYEVYKPITYIHESPEASEEEDDDVEVEGEMDDDDEDYDPLEDAHASGGKWKPPTMRHSPPVVPESHTGGKWRPEQRPTLHVAHAQLTRISPNWDEHVEELDTVEVLEGQHPPVGHTKGKWIPGTKMQRLEYKEEVVELAKSANQEYWCNICCRRLKNKTNYENHLKTGYHLKRAEPERQLEKAELGDILHGELSKSLVIEVEETKASNRSGCTKKRKRRANFIKCQLCKLSMLRHLVGKHLISHYHYRRMQNNPTKSLHMILENIHSIVLQSPFQCRPCRFYTNTEEMFLQHWSSSTHQDATEGLGKFWCSYCHFECEDNNQMRRHLLGVEHKEVILAINRSVPICISKPLSFDCNRCGDKFRYNAELRRHMLDCHPGKELCGTISNEYQNRYECTTCADMFRSKIALQRHEKNKHSINKYFCSICKMVFNTPCQARRHRKTLVHRKCAAEAAKSLGVRRTTAVKNVNSCGKCDFIASSDVEAMLHELAHHKSGADCNVANKTISSTACAGKNNKLEQKPTKPKVIELPKLKCKDCVEFFDCKESLKEHRDVSHPLLSHVCLSCGESFALPQALGRHTRNCQPKASTSKAAAEIKKCGENSFSCDLCDFSAPFESELIFHRLHHTLGPLSKTQIIECPICSKEFRKYSLRCHLRQHTNEKNFICEVCDMKFARSHNLKDHMKSVHGVPVNEGMSVELTTSANPEPTTAKKPKKLSSELACSSCPKTFSSSYMLKKHSVSHAVSPSGNLENSCKFENCKYVAASATLLRVHAASHAKEQLKCSEPSCSYEGKSLLHLKRHSRTHLAPTKLYACDKCEFKARIKGHIRRHMLTHSGEKPFRCPHCLFRCSTFDNLRKHVLKTGKHPGKFIYECQRCAKGEQQQRKSFKTNSYVEFQAHKAAMHAHALEEESKRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01045850;
90% Identity: -
80% Identity: -