Ccap005577.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- -
- Assembly
- GCA_000347755.4
- Location
- NW:585394-619060[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.026 1.3 9.1 0.5 3 23 366 387 364 387 0.94 2 9 0.015 0.76 9.8 4.6 2 23 516 538 516 538 0.91 3 9 0.0014 0.069 13.1 0.6 2 23 626 648 625 648 0.94 4 9 0.0024 0.12 12.3 0.5 3 23 957 978 957 978 0.99 5 9 0.00067 0.034 14.1 0.5 2 23 1032 1054 1031 1054 0.93 6 9 0.011 0.56 10.3 3.6 2 23 1093 1115 1092 1115 0.96 7 9 0.015 0.77 9.8 2.4 2 23 1129 1151 1128 1151 0.94 8 9 9.3e-05 0.0047 16.8 0.5 3 23 1222 1243 1221 1243 0.96 9 9 0.034 1.7 8.7 0.7 1 23 1339 1361 1339 1361 0.99
Sequence Information
- Coding Sequence
- ATGGCCGCGTCTATTTATGCCACCCCACCGCCGGACTTAAGCAGCGAGGACACTGCACTATCTGATGTCTCGAATGCATCATCCCTGCATAATcgcagcaatagcaacaacaacaccaacagcaacagtaatagtaacaccaacacaaacaccagcaataacaatacaacaacaagcaacaacaacacagcgagtactaatacaataacaaataagcaaaaacgCAACATCGCCGAAGTCCTAGTCAGTGGTGAAAGTCAAAGAAGCCCAACAGAGCAACAGTCACCAAAACGATGTGCCACAGCATCACCAAAAACAACTAACGGTATAAGCGGAAGCATTACAAGTGCCGCAATTAGCGAAGAGGAGGTCGTTGATGGTAGTTCAACGCATGATGAAGGGGCCGCGGACCAATACGCTGACATGTCAACGACTCTGACGGCCGACGGTGGCCCCTCCGCGGCAGCAATGGCAGCTATGGCAGCGGCAGCAGCCAATGCAGCAGCTATGCAATTGCAATTTCTCGAAGCGATCAACGATGCAGCAAAGAAGCGACGTAAGCAGAATAATCCCAGTCGTGTGGGCGCTCAGGctgcagcagcagtggcagcagcggcggcggcagcggcggcaGGTTTGAGTTTGAATAAGGGCACTGAGAGTGCACTAATCAATGTGGATGAAGCTGAAGCCGTTATTGAAGATAAGACAGAAATTGGGGCAGACAGCGTGGAGTCAATAGCATCAGCAGCAGTGGCATCTAACACTACACCAACAAAAGCACTGCCAATCGACTATGAAGATAAActatcaaaaatgtttttaccaAAATCAATGGAACAGTTAAAGGAcacatttgaaatgttgcagcagaagcagcagcagcaacaacaacaagagcagcaACTTGGAAACATATCAACAGCAGACAGCGTTTTGACACGTGCCGAGGACTATGCAAACACGCCACACATTATTATACCAAAAACTGAAAGAGACTCAGACGCAATTGTCATTAATGAGGAAGTAAATGACAGCAGTTCGCCGAAGCCACAAGAGTCCGCTGATGAGCTGAGAAATCCTTATCAGACATTTTGTAAAACTTGTGGCGAGAACTTTGAAACCGAATTTAAATTAGGCCTCCATATGCTGCAAGAGCATCAAAGTGATGGAGAGACGCAGCAGCAGCGCGCCCTTAGCGCAACGGAAAATGGTCAGCCGAAAACAGGTGAGCTTATTGCATATGACAGAATGTCCGCAGTGAACGTTAAAATGGAGCGTCCAGACTATGAAAGCTCCGACTCACCACCCACAAATGTCAGGCCCACTGGCGATCCCAATGATAATGCCGGATCTAACCTACTTATGAACGGCAAAGAGTCTTGGCTGAATGCCATGCCGGGTATGGGGTTTCCTTTTCCGCCAGAGGCCGCAGCAGCTGCAGCACTCTCAGCCAGTGGCTATCTACCGCTCCTTGGCATGTCTGGATTTTCCACCGTCGATGGCCTGAATCGTCCGCCGATGCGTATTTTCAATCCCGAAGCGTACTGTGACCTCTGCAATAAGGAgttttgcaacaaatatttcCTAAAAACGCACAAAGCCAACAAGCACGGCATCTATGATCCCGCGGTCGCTGCGGGAGCTGATAGTGGTGCCAACAATACTGGTGGCAGTATGAGTACTATGACACAGATGTTGCAAttgcaaatgcaacaacaacagcagcagcaacaacaacatcaaagccTGCATCATtttcagcaaaaacaacaattagcATTAGAAGAGGCGCAGAAACAACAGCTCAGCAGCCAACAAGCCGCTAACGGCACTCTTCCACAACAAATCACACCGCCCGCTCCACCACCCATCTACTGCGATATTTGCTCAAAACGTTTTACGAATGTCTTTGCTATGCGCCGCCATCGTGCCAAGGCTCACGAACAGCCGCGCAACAGTCCCGGTGAACAGACAAATCTCACACCACCGACTCAGCAAACAATTGTTCAGTCGAACAAATTAGACTCGCCGTCTACAGTTGctcaaaatgaattgaaaaacgATTCACCTAATACCAAATCCCCAACAGAACTCGCTACCAAACCGTTCCAAATGCCCGACGGCTTCCGCCAAGACTTCACACTGGAGCAGGAAGAAGTGGCTTTTACGCCACAACCGCGAAAACTTTCGCCGCAATCGCAACAGCAGGCACGCGATGCCAATTTTTCACACGACAAACTACGTCGCCTTGGCGTGCTTAATCCAGAAGCTTTTTGCGAGATCTGTTGCAAAGAATACTGCAACAAATACTTTTTGCGTACGCACAAATGGAAGCGTCACGGCATATTTGTGCCACCCGACGATCTCAAGGATGACCAATTGCAACTGGCGCAGAAAATGCCATGGTCTTTCATGGGTCTGCCTGGCATGCCACTGAACTTAATGATGGCCAACGATAAGGCGCTGATGGCCCAACGGATGTTCGCTGCTGCCACTGCAACCGCTACTGCCGGCGCAAATGCAACCAATTTTGCGACCAATGTAAGCACTGACGATGCCACTCAACACATAGCCAAACGCATCAAGCTCGAACAAGTGGATGAAGAGCTGTCTAGAGCTAATGATGAAAATCAAGAGAATAAATGCTCCAGCGTTCGTCAGTCCGccgaacagcagcagcaacaacaaatcgcTTCTCACAGTGTGCCATCTACGCCAGAGCCACAAAAGATCTTATCTGAGTCCTACAATTCGGGTGCTAATATGCCTGCCAGTCCGGAGGCCGCAGTTGGTTTGCAAAATCTACAAAAACTGCAGTCAATGATACAACAACTCAACGACCTGAATGGAAAACGTTCGATGGGGTGTCATCTCTGTGGCCGTGAGATGGAGAATCAATACGCACTACAGGTTCACATGATGACCGAGCATGCTGGGTTCCTCGAAGGCAGTAGCACAATGCCACTGAACTTTcaacaacatatttttcaacaacagcaacaattgcaaGCACAACAAGAACAGCAGCAACAGGCACTCAAACTTTCACCCTCCGGTTCGCCGGGCATTTTGCCGCAACACAATGAGATGCGCTGCAATCAGTGCGACCGCGACTTTACCACTCTACAAGAATTCAAGCAACATATCGCCGAAGTTCATTTGCTTCCCGGCAGTCCACTGCGTGAAGGTTTCATTACGCCTGAGCGTCCCATAAATACGAACGCGGCAGTGATGGGTTCGCGCCCACCCTACACTATCACACCGACTAGCAGTTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACCCACATGCAGCGTATGCACGGCATCGAGATCGAGAATGGCGCCCAGATTGGTGGCGTAGTCTGCAACATTTGCAATAAAGAGCTTTGCAGCAAGTATTTTTTACGTGTCCACAAGCAAAACACGCATGGAATTGTCGATGAAGGTGCTCCATTGCCACAACCACGCCAAAACGGTTTGAGTTTCGAggcacaacagcaacagcagcagcaacaacagcaacaacagcaacagatgCACTCCGCTGAAAACGACTTCAAATGCGGTCTTAACTTGAGCCCCTTCGGTAGCGCTAGCTCGGGTGACTCCAAGTCTGATTACGCCAATTATACGGAGATCTGCACAATCTGCACACGACGATTCAGAAGCGCAAAGTGGCTGCGCGCTCATTTACAAAGCGACCATGGTCCGGCAGGTGTAGAAAAACTACGCGAGATGGAACAACAGTTAGGTCCACTAAGTAAATCTTCGAGTCCTACGCTCAAAATACCAAATGGCTCAGCCAGTTCCGGCTCCAACACTACGCCAGCCAATACCACAGCTGGGTTATTAACGAGCCCATCAAATCTGGCTCAAGCTCTACAAAATCTCAATGCCCAACACTTACTCGGTAGCATGCCGAAGAATATGTTGCCGGGCATGTTTGGAGCAGTAGCCGAGCAAGCACTGCAATCCCCACGTTTGCAAGAGTACCAGTGCTCTATGTGCCCCTTCACAACACCTTACTACGCATTTCTATTCATACACGAACGTTCGCATACTCTAATCGGTGGTACCGGAGAAGAAAACACTGCTACAGTCGAGCAATTGGTGCCCAACTGCAATATGTCTGATGAAGTTAACGGAGGAAATGAGGTCAAACCGCAATCTGATGTGGACGTATCAACCAAAGCTCAACTAGTACCATTATTACAAACCAACAATACGGTTTCAGGGGGCGGACGTGTTGAACCTACTAATTTGTCAACACGCACGGGCACACCAACTGGCTCGACGGGCAAATCGAAATCGTCGAAAGAGAGCAAAGCAAAACAAGCAGAAACCAAAGAGAACCAAAAGGTATTCGGTAACACAAAACCGACATTGCAGACCAAAGTGGAAAAAACCCGATCTATCGCCACATCCCCCATATTGATGGCGAGCTTCAATTCCGTTGCACAGGCAAAGCTTCATGAGTTAGCGCATAATAGTGGAAAAGTGGCAACTTATGCTGTACCGAAAGATATCGCTGCTGACGGTATGGATGAGGACGAACCACAAATGCAGGCTTTCGTATTGGAAATGAAATCGGAAAGATTCGAAATTGCTAAAGAGGTTGATGGCGCGGAGATTGAGGAGGAGCCAAGTAACAGGTTTGTGCCAGCTATAGTATATTTGCCCGTTAGGAAACGTGTCTCAGGGCCTGTAACGGTATCCTTTAACTTGACGCCAGCTTAG
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNASSLHNRSNSNNNTNSNSNSNTNTNTSNNNTTTSNNNTASTNTITNKQKRNIAEVLVSGESQRSPTEQQSPKRCATASPKTTNGISGSITSAAISEEEVVDGSSTHDEGAADQYADMSTTLTADGGPSAAAMAAMAAAAANAAAMQLQFLEAINDAAKKRRKQNNPSRVGAQAAAAVAAAAAAAAAGLSLNKGTESALINVDEAEAVIEDKTEIGADSVESIASAAVASNTTPTKALPIDYEDKLSKMFLPKSMEQLKDTFEMLQQKQQQQQQQEQQLGNISTADSVLTRAEDYANTPHIIIPKTERDSDAIVINEEVNDSSSPKPQESADELRNPYQTFCKTCGENFETEFKLGLHMLQEHQSDGETQQQRALSATENGQPKTGELIAYDRMSAVNVKMERPDYESSDSPPTNVRPTGDPNDNAGSNLLMNGKESWLNAMPGMGFPFPPEAAAAAALSASGYLPLLGMSGFSTVDGLNRPPMRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYDPAVAAGADSGANNTGGSMSTMTQMLQLQMQQQQQQQQQHQSLHHFQQKQQLALEEAQKQQLSSQQAANGTLPQQITPPAPPPIYCDICSKRFTNVFAMRRHRAKAHEQPRNSPGEQTNLTPPTQQTIVQSNKLDSPSTVAQNELKNDSPNTKSPTELATKPFQMPDGFRQDFTLEQEEVAFTPQPRKLSPQSQQQARDANFSHDKLRRLGVLNPEAFCEICCKEYCNKYFLRTHKWKRHGIFVPPDDLKDDQLQLAQKMPWSFMGLPGMPLNLMMANDKALMAQRMFAAATATATAGANATNFATNVSTDDATQHIAKRIKLEQVDEELSRANDENQENKCSSVRQSAEQQQQQQIASHSVPSTPEPQKILSESYNSGANMPASPEAAVGLQNLQKLQSMIQQLNDLNGKRSMGCHLCGREMENQYALQVHMMTEHAGFLEGSSTMPLNFQQHIFQQQQQLQAQQEQQQQALKLSPSGSPGILPQHNEMRCNQCDRDFTTLQEFKQHIAEVHLLPGSPLREGFITPERPINTNAAVMGSRPPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKQNTHGIVDEGAPLPQPRQNGLSFEAQQQQQQQQQQQQQQMHSAENDFKCGLNLSPFGSASSGDSKSDYANYTEICTICTRRFRSAKWLRAHLQSDHGPAGVEKLREMEQQLGPLSKSSSPTLKIPNGSASSGSNTTPANTTAGLLTSPSNLAQALQNLNAQHLLGSMPKNMLPGMFGAVAEQALQSPRLQEYQCSMCPFTTPYYAFLFIHERSHTLIGGTGEENTATVEQLVPNCNMSDEVNGGNEVKPQSDVDVSTKAQLVPLLQTNNTVSGGGRVEPTNLSTRTGTPTGSTGKSKSSKESKAKQAETKENQKVFGNTKPTLQTKVEKTRSIATSPILMASFNSVAQAKLHELAHNSGKVATYAVPKDIAADGMDEDEPQMQAFVLEMKSERFEIAKEVDGAEIEEEPSNRFVPAIVYLPVRKRVSGPVTVSFNLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045834;
- 90% Identity
- -
- 80% Identity
- -