Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:1181003-1187223[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.29 15 5.8 5.3 2 23 355 377 354 377 0.95

2 8 0.0002 0.01 15.8 0.5 1 23 875 897 875 897 0.97

3 8 0.00037 0.019 14.9 1.9 1 23 903 925 903 925 0.98

4 8 0.00016 0.0081 16.1 0.9 1 23 931 953 931 953 0.99

5 8 8.5e-07 4.3e-05 23.2 0.9 1 23 959 981 959 981 0.99

6 8 6.8e-06 0.00034 20.4 1.0 1 23 987 1009 987 1009 0.98

7 8 0.00022 0.011 15.6 4.8 1 23 1015 1037 1015 1037 0.99

8 8 4e-05 0.002 17.9 4.1 1 23 1043 1066 1043 1066 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.29	15	5.8	5.3	2	23	355	377	354	377	0.95
2	8	0.0002	0.01	15.8	0.5	1	23	875	897	875	897	0.97
3	8	0.00037	0.019	14.9	1.9	1	23	903	925	903	925	0.98
4	8	0.00016	0.0081	16.1	0.9	1	23	931	953	931	953	0.99
5	8	8.5e-07	4.3e-05	23.2	0.9	1	23	959	981	959	981	0.99
6	8	6.8e-06	0.00034	20.4	1.0	1	23	987	1009	987	1009	0.98
7	8	0.00022	0.011	15.6	4.8	1	23	1015	1037	1015	1037	0.99
8	8	4e-05	0.002	17.9	4.1	1	23	1043	1066	1043	1066	0.98

Sequence Information

Coding Sequence: ATGATGATCAACACACTGCTAGAGCATGTTCCCATAAAACTGGAAGCACCGGATAATGGCGACGACGGAGGCGCAGAAAACAATagcaaacagaaaaacaaaaatgtgcaaaCGAATGGTAAGAATGTAGTCGCTGAAGAAGATGAGGAGGAGAGCAGTGAGGGTGAGGATgacgatgaagatgaagatTCTGACGAGGATGACTCGGATACGGATCTTCCAGATGACGATGAAGAGGAGACACAACTTCCGATTAGCAGCGATGAGGAAGCAGAACTGGAGGCACAACGTATACGATTTCatgaattaatagaaaaaacctTGCATTTACCAACTGTTTCAAAAAATGGTAGGAGGAGTGGTGACAAAAAGGGCAATGTCCTAAAAAAGCTTCGTGGTCGTAGTGTCTCAAGTTGTGCTAGTGTTAGTAGTAAAACATCAATTGCTTCCTGCTCTTCCGCCTCGACATTTACGGAAAATAATCATGTTAAGCGCACTGAAGATGATAAACAAAAACAGAGTGCCAAGTTTCAGAAGACGGTTGCTTGTAGAAATGTTGAGAAAGCAATGAGTACCACTGAATCTGAAGCGGAACATGAAGATGGCGCCTCGACAAATAAACGCTCGCTTAGAAGCCGTGTACCTTCCACTTGTTCCGTAGCATCATCGCTAGTCACGCCATCCTGCCAAACCGAATCTTGCGGCAATATTTACGTGTACGAGGACCAACAAAAGCTAATATTCAGTTGCAGCTTTTGCGAATTACGTTATTGCGATTTAACTAAATTCGGAACGCACTTGCATGATATTCATAAATTGTTTCGTGAAAAAGAGGACACGACCTTGCCAACTCCCGCGCGTAAAAGTCCACGCACACAATCGAAGCAACAGGCAGAAAGTAAAGCGCAAGCGCAGGACAACATACTTAATGTGGTAGTAAAGACAGAAGTGGTGGAGGATGATGATACTTCAAGTGCGCATTCAATGTCACCAATACCTGTAGATGCAACAATTGAATCTTGTGggaatgtgtttattttaaatgacaaaaaacttTTCCTAATTTGTGGACACTGCGAATGCAAATATGCAACATTGGATTTGTTTCATAAACATTTGCGGCAGCAACATCAGTTTTTCACAGGgccagtaaaagaaataaatgtgttGCCTAAGCCGGAGATAAAGATTGAAGGATGCGAAGAGATGGATCAGGTGGCTGGACTTAGTTCTGCAGCCTTTGACAGAGAGAAACAGCGAAGCACAAGTATTGAAGCTATGATTGATTCGCCCGTAATGGTGGTGTTACCTATGTCACAAAACTTGGATAATAATGATATGTTAACACAATCGGCATCATCTGTCCAAGTACCAGAAACTCCACCACCAGATGAAGAAAAGATGGCGGCAGAACCGGTTGATGACACTACGAGTAAAGATAAAATGCTGACTGAAAACATAATAGCTAATGATAATGAAATATGTGATGCAGAAAATATAGTGCGTGACGAAGAAGTCAAAAACAAACCCAACAGTAATGAAATAGAGGTGACTAAGGAAGCAGatgttgaagaagaagaagaagtggccAAAAACATTTCGAAAAACGAAACACCACCCACGGTGGAGGAGCATGCGCAGTTCCAATCAGATCAACAGGTGCAAACAGCCAAGGTAATGGATGAGGAGGATTTGAGCAAACCATGTGAGGAAACGCttgaagaagagaaagaggTTAAGGCGGTGGatgaaaaaaagacaacaaaaccTAAAAGAAAGCGACGTTCGGTTTATTCGAAACGTTCGCCATCAAAGCGCCGTGCTACTACACCGAAAGCTACAAATGTACAAACATCTGATAAAAACGAAGCTGACTCCACCGCCGCTTCGATTGTTCCTACCGTAGTTGAGATTGACGGCGCTGCTACTACACCCAACGCTGCTGTTGGCGCAGTTAATACTACTGTCGAGGGAAATGATTCTACACTTGGTAAAGCTCGTACTTCACTCGCAGCTAAGTCTTCGATTGATGTAGCTGAAACGGTTTCGACAACCGAGACTGAAACGAAAGTTGTGCCAATACCAACAGCTGTCGACACTTTAACAATTGTATCTGAATACGAAATATCAGGATATGAAATAACTGAGTATGTGACAGATGTTTTAACGCCAACTCCTATAAATCCAACGTATACCGTTGTAAGTGAGAACTTTaccaataatttaaaacaatatcccGAAGCTCCGTCCGAAGATTTCACTACCACAGTCGATGCTGAGATCAAAGAACCAATTTCTTTAACAGAAGATCCCACAGATAATATTGCTTCTACAAGCACTGCAGACGTAAAGAAACTAAAAGCCAAGACAGCGACCAGAACTCGGTCTAGTTCAAAGCCGACTGCAAAGAAAACACGGAACAATAAAAAGGTTGCATTCGCAAGTGAACCATCAGAGCCAGCAAACGAGGTTATGTCGCCCCCTAACCCTGCGTCAACTGTTAACAAAACATTGTCCACTGATGATatcgaaacgaaacaaaatacatCGACGGACAGCGTTAAAACTCTCATAGAACCCATGTGCCGAACTACATGCTATTCGGAAACCCATAAACTACGTTATGCTTGCAACCAATGTCCAAAATCCTTTAGTAAATCACCACGTTTGGCTGAACACAAACGCTTGCACACGGGCGAGAAACCGTTCAGTTGCGATGAATGTGGCAAAACGTTCCGTATTAAGAGGCGTCTAAGTGAACACAAAATGCGTCATCTCACAGTCAAAGCATATAAATGTGAAACCTGTGGCTTGCCAGTGGCCACCAAGCAAGACCTGCGTCTGCACCAGCGTCATCACACTAACGATCGACGTTACACGTGCACCGAATGCTCGAAGGGTTTTGTGCGCAGCTCCGATTTGAAGATACACAAACGTGTGCACACGGGTGAGAAACCATTCGAATGTGAAATTTGCAAGAAAACCTTTCGGGCAAACCAGAATCTCCTTGTACACCGTCGTTCACACATGGGCGAGAAGAATTACAAATGTGATTATTGCGATAAACGCTTCATGCGCAATATAGACCGCAAAGTGCACCATCGCACACACACAGgtgaAAAACCATTTAAATGCGAAATCTGTGGACGTTGCTATTCATCACGCGCACATGTACGCACACATCTACAGCGTGAACATGTACAATTTGCCGGTGTACCTAAAACCGAACGCAAGAAGGAGCGTAAGGCAAAACAAACTGCTGCCGCCGGCGTTGAAGCTCTTAAGCAGCAACAATTAATGGATGAAATACAAGAACAAATATTACAATGTTTAAAAACGGATGAGTTGGAGAATGAAGAGGATGAATTAGTGACGGCAACTaatgctgcaacaacaacaacaacgagcaaaataaaatcagctGAAGTGAAAAAGCAAAAGTGTGGCAAATCGACACCACGAATGTCGCCAGTGTTAAAGGCAGTTGATGATTTAGCCGCCCAAAAAGCACAACACTCACAATCGTTGGCTATGCAACAGGTGTCTGTAACTGTGTCCATGCAAGTGCAAAAGGATATTGGTGATATGGGGGTTGAACCAACgccagaaaaagaaaatgccaCCGCATTGTTGGCAGGTGTCTCAGCACCGTTaagcaaaaatgcaaagaatGAGCGTAAAATAACGAGTTATTTCACTGTGTTGGGACAAAAAACGGAAATTTAA
Protein Sequence: MMINTLLEHVPIKLEAPDNGDDGGAENNSKQKNKNVQTNGKNVVAEEDEEESSEGEDDDEDEDSDEDDSDTDLPDDDEEETQLPISSDEEAELEAQRIRFHELIEKTLHLPTVSKNGRRSGDKKGNVLKKLRGRSVSSCASVSSKTSIASCSSASTFTENNHVKRTEDDKQKQSAKFQKTVACRNVEKAMSTTESEAEHEDGASTNKRSLRSRVPSTCSVASSLVTPSCQTESCGNIYVYEDQQKLIFSCSFCELRYCDLTKFGTHLHDIHKLFREKEDTTLPTPARKSPRTQSKQQAESKAQAQDNILNVVVKTEVVEDDDTSSAHSMSPIPVDATIESCGNVFILNDKKLFLICGHCECKYATLDLFHKHLRQQHQFFTGPVKEINVLPKPEIKIEGCEEMDQVAGLSSAAFDREKQRSTSIEAMIDSPVMVVLPMSQNLDNNDMLTQSASSVQVPETPPPDEEKMAAEPVDDTTSKDKMLTENIIANDNEICDAENIVRDEEVKNKPNSNEIEVTKEADVEEEEEVAKNISKNETPPTVEEHAQFQSDQQVQTAKVMDEEDLSKPCEETLEEEKEVKAVDEKKTTKPKRKRRSVYSKRSPSKRRATTPKATNVQTSDKNEADSTAASIVPTVVEIDGAATTPNAAVGAVNTTVEGNDSTLGKARTSLAAKSSIDVAETVSTTETETKVVPIPTAVDTLTIVSEYEISGYEITEYVTDVLTPTPINPTYTVVSENFTNNLKQYPEAPSEDFTTTVDAEIKEPISLTEDPTDNIASTSTADVKKLKAKTATRTRSSSKPTAKKTRNNKKVAFASEPSEPANEVMSPPNPASTVNKTLSTDDIETKQNTSTDSVKTLIEPMCRTTCYSETHKLRYACNQCPKSFSKSPRLAEHKRLHTGEKPFSCDECGKTFRIKRRLSEHKMRHLTVKAYKCETCGLPVATKQDLRLHQRHHTNDRRYTCTECSKGFVRSSDLKIHKRVHTGEKPFECEICKKTFRANQNLLVHRRSHMGEKNYKCDYCDKRFMRNIDRKVHHRTHTGEKPFKCEICGRCYSSRAHVRTHLQREHVQFAGVPKTERKKERKAKQTAAAGVEALKQQQLMDEIQEQILQCLKTDELENEEDELVTATNAATTTTTSKIKSAEVKKQKCGKSTPRMSPVLKAVDDLAAQKAQHSQSLAMQQVSVTVSMQVQKDIGDMGVEPTPEKENATALLAGVSAPLSKNAKNERKITSYFTVLGQKTEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -