Ccap009866.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- -
- Assembly
- GCA_000347755.4
- Location
- NW:1398459-1418566[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.9 3.5e+02 1.5 5.4 1 23 440 470 440 470 0.79 2 13 0.0018 0.091 12.7 0.2 1 23 476 501 476 501 0.97 3 13 5.5e-05 0.0028 17.5 2.9 1 23 506 529 506 529 0.95 4 13 5.7e-05 0.0029 17.4 1.8 3 23 536 556 534 556 0.97 5 13 0.18 9.2 6.4 6.0 2 23 563 584 562 584 0.95 6 13 0.0005 0.025 14.5 3.3 3 23 593 614 592 614 0.95 7 13 0.011 0.56 10.3 1.0 1 23 620 643 620 643 0.95 8 13 0.042 2.1 8.4 1.8 2 23 654 676 653 676 0.96 9 13 0.00022 0.011 15.6 0.5 1 23 706 728 706 728 0.96 10 13 0.00019 0.0098 15.8 1.4 1 23 735 759 735 759 0.97 11 13 0.00038 0.019 14.9 0.2 3 23 767 787 766 787 0.97 12 13 0.011 0.57 10.2 0.3 1 23 794 816 794 816 0.98 13 13 0.00027 0.014 15.3 3.7 1 23 822 845 822 845 0.98
Sequence Information
- Coding Sequence
- ATGGAGACATGCAGGACATGTGCGAGATGTGATTTTGAGGATGAAACCAAgtggttcgatttatttcatACAACGCGCTGTACGCGTGAAGTCGAAGAGATGCGTGTGGAGTTCAATAACTGGCATTTGCAGATATCACCCAATGACGGCCTGCCACAGAAAATCTGCTCGGattgtttttcgaaattttgtaaTGTTTTCACCTTTCGCATGCAATGTCAGCAAGCGCAAGTGAAGTTAAATAACATCTTTGACAAAATCGAAACACAAAGCATGGATGACGAACGATTCGATGAAAATCTCGAAGAATTGAGTGCACAGCTTCTGCGTATCGTGGAGGAAAATGCACGACAACAAACGAACACAACCATTAATGAACAAAACTGCCAACTAGATAATTGTGATGACAATGCTGTGGCTTCGACTAATGTCACCCCCTCAGCAGCAGCCATTGTAATGTTGAATATGCTCAATGAAAACAGTACTAATAACTGCACCACCGCCAGTTGCAGCGCGAACGGAGTACGTGAGGTAGTATCAGAggacgctgctgctgctgctgatgtgcCAGCTATCCAAACAGAGGTTTCAACTAATACAATCGAAGACACCTTCTTAGCAAAAACAGTGCCAATAAGGAATGTGGATAATACAAGTGCTGCCACCATAACTGAAGCTAACTTTTACACTGCCAGCGATAAATGTCAAAGTGAAGCGGATATACGAATGCCAAAGTTGTTGGCTCTTGCCGTTCCTTCGGTGACCGTTGACAAAGAACTAGATGAGGTGGTAATAGCGGAGAGAAATAAGCCTAATAAGCCTAATAAAGATATGACATTAGAAATGGAGAACGGGAAGGGAAACGAAGAAGATTTAGGAGTAGGAGAAGAAGATATAGATGAAgatatacatttacatgtagATGATATAATTGAGGAGGATTTTACTCCTGACGAGGAGCAGGAAGAGACGTCAGTTGCGGCAGATAGGCTTTTGAATCATGACACCGCCCAAAATGGAAACTATTTAACACATATGAATGGACATATGGCGCAAACGGCAAGTTATACCAAAGATAATTTCACCGTTGATAATGATTAcgatgatgaggatgatgatgacgacgatgatgatgatgatgagaatGCCTATTACGATGAAGATGAAGGTGTACTAGAAGCATTCGAACCAGTCGCACTCCCCACGAATACttataatacaaacaacaatacCATATTAACACAATCCCAATTGGTCTTTCAAACATCtgccaataaaaattgttacaacTCACAACAGGAGCCAGTAAATATTGTTTTCGAGTGTAAATACTGCCACAAAACAAAGAATGTGCCTAGCACACATTTCGAAACCCAAAAGGCGCTACTTGAACACATAACCAATGCACACGATGCGGAATATCCATTTACCTGCCCCCAACGCGGTTGCACGGAGGGTTTTCGGGACGCCGCCTCACGCACGGTCCACATGAAAAGCGAGCACGTGGCCAAGCATTATGAGTGTGATGTGTGCGGCAAAAAATATGCTGATCGCTTTAATTTACGACATCATTTTGAGAAATTCCACAGCGAGACCGATTTTGGGTGTGACACTTGCGATAAGCGTTTCTATTCGCGTAAAAGTCTTAACTATCATATGAAATGGCATAATCCGGAATTGTTGTTGCAGTGCGGGCACTGTGATCGATTGTTCATTAATCAACGGCATTTAAAGTGTCACGAAGAGACGCACAACGGTGTGAGAAACAGTGAGTTTTGTACGTTTTGTgggaaaaCTTTCATACACTTGAAAACGTTACGCTGGCATTTGTACCGACAGCATGGTGGCGAAAAACCATACAAGTGTGGCCATTGCACTGAGGTTTTCGCTTCATACCTGGAAAAGCGCATACACATGCTGGAAAATCATTTGGAAAATCTCACCACCCTTGAGCGCACCGAATGTATGCTGTGCCGCGAGCACTACGCGGATGAGCATGAATTGAGTGAACATATACGAAGCAAGCACATTGAAAGACCCAAATCATCAGTACTGCTAATATCGAACAATAAACGGGTGGTACGAAACAAGCGTCAGAAAAGCTATAGTGGCATATTCCAATGTGAGATATGCAAGCAACGTTTCAATATGAAATCTGCATTGGATCGACATTCGGCTGTGCATTCAAGCGTTGGGCGACCACATAAGTGCCCAATTGAGTCGTGTGCGAAACGTTTCAAGCGTGCGCAAGATATGAATTGGCATATGAAGACGCATTCGAATGAGAAGCCGAATATCTGCGATGTATGTGGTAAGGGATTTGCTCTGAAATATGTGCTAAATCAGCACAAGCGGAGTCATGAAGTTCtggagaaaaattttaagtgtCTGGTATGTGGACGTGCCTATCTCTTTGAGAAATCATTGCGTGTGCATGAGCGTGTGCACACTGGTGAAACCTACTATCGTTGCGACTTGTGTGGGGAGAATTTCGTAACACATATGAAATTCAAAACTCATATGATGAAAAAACATGATCCAAGCACAACAAATCTGGATGACTATAATTTGGATGTGTTTGAAGAACAAATGTATGAACCTTAG
- Protein Sequence
- METCRTCARCDFEDETKWFDLFHTTRCTREVEEMRVEFNNWHLQISPNDGLPQKICSDCFSKFCNVFTFRMQCQQAQVKLNNIFDKIETQSMDDERFDENLEELSAQLLRIVEENARQQTNTTINEQNCQLDNCDDNAVASTNVTPSAAAIVMLNMLNENSTNNCTTASCSANGVREVVSEDAAAAADVPAIQTEVSTNTIEDTFLAKTVPIRNVDNTSAATITEANFYTASDKCQSEADIRMPKLLALAVPSVTVDKELDEVVIAERNKPNKPNKDMTLEMENGKGNEEDLGVGEEDIDEDIHLHVDDIIEEDFTPDEEQEETSVAADRLLNHDTAQNGNYLTHMNGHMAQTASYTKDNFTVDNDYDDEDDDDDDDDDDENAYYDEDEGVLEAFEPVALPTNTYNTNNNTILTQSQLVFQTSANKNCYNSQQEPVNIVFECKYCHKTKNVPSTHFETQKALLEHITNAHDAEYPFTCPQRGCTEGFRDAASRTVHMKSEHVAKHYECDVCGKKYADRFNLRHHFEKFHSETDFGCDTCDKRFYSRKSLNYHMKWHNPELLLQCGHCDRLFINQRHLKCHEETHNGVRNSEFCTFCGKTFIHLKTLRWHLYRQHGGEKPYKCGHCTEVFASYLEKRIHMLENHLENLTTLERTECMLCREHYADEHELSEHIRSKHIERPKSSVLLISNNKRVVRNKRQKSYSGIFQCEICKQRFNMKSALDRHSAVHSSVGRPHKCPIESCAKRFKRAQDMNWHMKTHSNEKPNICDVCGKGFALKYVLNQHKRSHEVLEKNFKCLVCGRAYLFEKSLRVHERVHTGETYYRCDLCGENFVTHMKFKTHMMKKHDPSTTNLDDYNLDVFEEQMYEP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045705;
- 90% Identity
- -
- 80% Identity
- -