Ccap010082.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- topi
- Assembly
- GCA_000347755.4
- Location
- NW:432376-434328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.01 0.52 10.3 1.0 1 23 215 237 215 237 0.98 2 9 1.7e-05 0.00088 19.1 1.0 1 23 243 267 243 267 0.97 3 9 0.00013 0.0067 16.3 2.8 1 23 274 298 274 299 0.94 4 9 9.3e-06 0.00047 19.9 0.2 2 23 309 330 308 330 0.95 5 9 3.7e-05 0.0019 18.0 1.1 1 23 338 362 338 362 0.96 6 9 0.0016 0.083 12.9 1.0 1 23 368 390 368 390 0.98 7 9 0.00057 0.029 14.3 2.0 2 23 397 419 396 419 0.96 8 9 0.0044 0.23 11.5 2.5 1 23 425 447 425 447 0.97 9 9 0.00027 0.013 15.4 0.1 2 23 454 475 454 475 0.97
Sequence Information
- Coding Sequence
- ATGGAATCATATCTTTGCAAGCTTTACCGTTTGTGTCGTACatgtaaaaaagatttaaacacGACCAAAGCTGCGGATACGGCAATGGGCATTCATATCTTCGAAACACCTCAACTTGCAGAAAAACTCGCTGTTTGTATCCAAGCAGATGTGTTGGCAACAGACGACTATCCCAAACTGCTCTGTTCCAACTGTTATCAAAAAGTTAGCGATTTCTATCAGTTTCGAGAAATGTGTGTTGAATCAATGCAGCGCTTCAAGCAGCTACTAGAAGGACAAAAATTACTTGCGACTAGCGATATTATTGTTGAAGAAACAGATATATTCGAAAATTCTACTGATAGTTCTCAAAAGTGTGTTAAGGAGCATACAGAAAGGaagaaaacagtttttaaaGGGAGATGTGGCGAGATTATAGAATGGAAATGTGTAGCAGAAACATATTCAGAACTAGAAATATTAGCAAAAGAAGCACGAGATAAGAATGAAGCTGCTTCGGAAGTTGATGAAGTTGACAATTCTAGCAATAACGAACCATGGAATAAAGACAGTCAAGCTGGTAGTGTAGATACAGCtatcaaaaacaataataaatcgCGAAAGGTGTTAACGAGATCAGTGACTGCAAAAGAATCTGCCATTTATCGCTGTGATATTTGCCCCGCACGATTTTTCATTGAACACCGGCTAAATGCACATAAACGCGAACATGAAGGTCTTTTGCCATATCCTTGCACACATGAAGGATGTGAAAAATCATTCAATCGTTGGAATGCGCTTTCTAGACACCTGCAACAGCATGAAGGACGCCAATTTCAATATGCTTGCGAACAGCAAGGCTGCGATAAAGTTTATAAACACAAACCAACGCTGGTTATGCATCAGCGAAAGCACCACAAATTGGGACCCGAATTGAGATCACTTATATGCGAGATTtgtgggaaaatatttaaaacctcAACAATGCTAAACGATCATCGTTATATACATAAGGATACATCTGAACGGCCATACGCATGCGATCAAGTGAATTGCACGCGTCGATTTTCGAATAAAGACAAACTGAAGGTACATCTTATGCGACACGCTGGCATACGGAATTATGTATGCCCACATTGTGGCATGCGTAAGACGACAATGAACGAACTCAAGGTGCATATCAATTATCATACATTGGAACGTACATGGCCATGCAGCTTTTGCACACATGTTTGCAATAGTGCCGGCAATTTGAAAACGCATGTACGCACCGTGCACGAACGTGTTAAGGATTACGCTTGTCGTCATTGTGAACGTACATTTGCCAAACCGGACACGCGTAAATATCATGAAATGACACATACCGGTGAGAAACCAAATGTTTGTGCAGAGTGTGGTAAACGTTTTCTACAACCGGCCGCATTGCGTACACATAGAAAAATCCATCAGCGTGAAAATGTGCACGGTGCAAAAGCGAAATGTGGTGGAAGTAGAAAAGCCTCAAGCGATAAAGCAAAACCGGAAGCAAAGAAAGTTGATATGGCTCGTGTGCAATGTGTGGAGCATGTGGAAGGGTTATTGCTGCAATCGGCTACGTAA
- Protein Sequence
- MESYLCKLYRLCRTCKKDLNTTKAADTAMGIHIFETPQLAEKLAVCIQADVLATDDYPKLLCSNCYQKVSDFYQFREMCVESMQRFKQLLEGQKLLATSDIIVEETDIFENSTDSSQKCVKEHTERKKTVFKGRCGEIIEWKCVAETYSELEILAKEARDKNEAASEVDEVDNSSNNEPWNKDSQAGSVDTAIKNNNKSRKVLTRSVTAKESAIYRCDICPARFFIEHRLNAHKREHEGLLPYPCTHEGCEKSFNRWNALSRHLQQHEGRQFQYACEQQGCDKVYKHKPTLVMHQRKHHKLGPELRSLICEICGKIFKTSTMLNDHRYIHKDTSERPYACDQVNCTRRFSNKDKLKVHLMRHAGIRNYVCPHCGMRKTTMNELKVHINYHTLERTWPCSFCTHVCNSAGNLKTHVRTVHERVKDYACRHCERTFAKPDTRKYHEMTHTGEKPNVCAECGKRFLQPAALRTHRKIHQRENVHGAKAKCGGSRKASSDKAKPEAKKVDMARVQCVEHVEGLLLQSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -