Basic Information

Insect: Ceratitis capitata
Gene Symbol: -
Assembly: GCA_000347755.4
Location: NW:1670125-1673321[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00039 0.02 14.8 0.1 1 23 249 271 249 271 0.98

2 7 0.00076 0.039 13.9 0.7 1 23 348 370 348 370 0.97

3 7 4.6e-06 0.00024 20.9 1.3 1 23 376 398 376 398 0.96

4 7 0.0015 0.074 13.0 2.0 1 23 404 426 404 426 0.98

5 7 1.3e-05 0.00066 19.5 1.7 3 23 434 455 432 455 0.96

6 7 1.9e-06 9.8e-05 22.1 1.6 2 23 461 482 460 482 0.97

7 7 1.8e-05 0.00091 19.0 0.8 1 23 488 511 488 511 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00039	0.02	14.8	0.1	1	23	249	271	249	271	0.98
2	7	0.00076	0.039	13.9	0.7	1	23	348	370	348	370	0.97
3	7	4.6e-06	0.00024	20.9	1.3	1	23	376	398	376	398	0.96
4	7	0.0015	0.074	13.0	2.0	1	23	404	426	404	426	0.98
5	7	1.3e-05	0.00066	19.5	1.7	3	23	434	455	432	455	0.96
6	7	1.9e-06	9.8e-05	22.1	1.6	2	23	461	482	460	482	0.97
7	7	1.8e-05	0.00091	19.0	0.8	1	23	488	511	488	511	0.96

Sequence Information

Coding Sequence: ATGTCAAGGAACGTACAGCTAATTTGTAGAGTCTGCTTAAAGAAATGCAAGAGCAGATTTGTTTCACTAACGGATATATTTCCAGTGAGTATGGAACATGAGTCAATTACTTATGAAAAAGCCTATACAACTTGCACACAGTTGGACGTAACAGTCGGAGTGGATGAACTTTCGAATCTGCTGTGTAATAGCTGTAGTCGTGATCTTCAGTATGCCTATGAATTTTGGATAAAGGCCAGAAAGAATTATGAAAAGCTTTATAGCAAAATGCTAATACAAAAGCATGAAGATATGGCAAGAGCGATTTCACCCTCTGAATTTGAATTACCCGAAAATAATGTGCTCATGACCTATACTCTCGCGGATGCTGACGTAATAGATGCATGCAGTAGTCATGTCGCAAAATGCATTAAAGATCCTCTTCTAGACTCGGAAAGTGACACTGAAAGAAAGCCAAATTTACAGACTATAAAAGAAGAGATTGTCATAGAAGAGAAGAGAGAGTCCCCAGCATTATCTCAAACATATTCGGATATTGTGTTTGACAGTGAAGACGAAAAGCCTTTAATGCAACTTTTCAttaaaacaaatgaaggcaacaaggaaattttatttgatcctCCTTCCAACCGACCTCGATcctttgatgatgatgatgaatttAAGACTGATGGGCATACAGCAAATGAAACGGCTACTGATGCAATGTTTTCTCCAGAAGCCCATATTTTCCCTAAAGGACGATTTCGTTGTGCCATTTGTGAGCAGAGTTATTTTACAACAGTTGGCTTGAAAGCACACATGGAGGTCCATTTAACAAAAAGTGATATAAGTAAAAAGAAGCGAGTGAGAAATAAACAgcgaaaaatatcgaaaaagcCTAATAAAGAGGCTGATACTAGATTTGAGAATACAGATGCTCAACAAGTTACTGAAAGTCAAAAACAAGCGTACGACGAAACAGACAGCCAAAAATCACAGAAGCAAGTACgaacctttatttcaagtcGTAAGGCAAAAGAGCCAAAACCGAAACGCATGTTTCCTTGTCAAGTGTGTGGGAAACACATGATATCGGCTTCAAAGTTGCGCTATCACATGGTGATGCACACTGGCGAAAAGGACTACCTCTGCACAATGTGCCCtaaggcttattccacgattTATGCACTGAAACATCACATACGTACTCATACTGGCGAAAGACCGTATGAGTGTAAATTTTGTGGAGATAGATTCTTACGCCCTACAACGCTCAAAAGTCACCAGCGACGTCATACCGGCGAACGTCCATATGGTTGTGATATATGCGGAAAGCGATTTATTCAACACTCATCGATGACAACGCACATGAAACTTAATCACATGGATAAAACCATTAAATGCCCACATTGTGATAAAAAATATGCTCGGCAAACAGATTTGAATACACATCTGCTTAGTCATACAGGCGATAAACCATATCCTTGTCAGTTATGTTCAAGTCGTTTTGTACGACAAGCGAACCTCAATAAACATATGAACCAACAACATGCTCAGAAGCCGGGTGTAACTGGGTTGACAAATTTGACGGATGGAAATATTAAAGCTGCTAAATTGACAACCAAATTATCTGAGGTTAGAGAGTTAAAAGCTATTTGTAGTGATGCGACTATCGATGAAAAGTTGGTAGATGATAGTACGTTGGTTGCAAAAACAGATGGTGATAACGGAGATAAAAGCTGTACTTCGATCGGCTCACAAGATGTTACGGCTTTATTAAATCAGCAACCATTACATATGTTAGGAGACCAAGCTTTCGAACAGCTTGATAATGATGATTTAGTATCTTGGAATTAA
Protein Sequence: MSRNVQLICRVCLKKCKSRFVSLTDIFPVSMEHESITYEKAYTTCTQLDVTVGVDELSNLLCNSCSRDLQYAYEFWIKARKNYEKLYSKMLIQKHEDMARAISPSEFELPENNVLMTYTLADADVIDACSSHVAKCIKDPLLDSESDTERKPNLQTIKEEIVIEEKRESPALSQTYSDIVFDSEDEKPLMQLFIKTNEGNKEILFDPPSNRPRSFDDDDEFKTDGHTANETATDAMFSPEAHIFPKGRFRCAICEQSYFTTVGLKAHMEVHLTKSDISKKKRVRNKQRKISKKPNKEADTRFENTDAQQVTESQKQAYDETDSQKSQKQVRTFISSRKAKEPKPKRMFPCQVCGKHMISASKLRYHMVMHTGEKDYLCTMCPKAYSTIYALKHHIRTHTGERPYECKFCGDRFLRPTTLKSHQRRHTGERPYGCDICGKRFIQHSSMTTHMKLNHMDKTIKCPHCDKKYARQTDLNTHLLSHTGDKPYPCQLCSSRFVRQANLNKHMNQQHAQKPGVTGLTNLTDGNIKAAKLTTKLSEVRELKAICSDATIDEKLVDDSTLVAKTDGDNGDKSCTSIGSQDVTALLNQQPLHMLGDQAFEQLDNDDLVSWN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -