Basic Information

Insect: Ceratitis capitata
Gene Symbol: PRDM5
Assembly: GCA_000347755.4
Location: NW:203601-206920[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0068 0.34 10.9 0.6 2 23 229 251 228 251 0.95

2 9 0.00043 0.022 14.7 7.0 1 23 283 306 283 306 0.96

3 9 4.5e-05 0.0023 17.8 1.7 1 23 314 336 314 336 0.98

4 9 0.00015 0.0076 16.1 4.2 2 23 345 367 344 367 0.95

5 9 6e-06 0.0003 20.5 0.2 3 23 375 395 374 395 0.96

6 9 8.7e-05 0.0044 16.9 0.6 2 23 404 426 403 426 0.97

7 9 0.36 18 5.5 0.4 2 23 435 457 434 457 0.90

8 9 0.00019 0.0098 15.8 2.6 1 23 462 484 462 484 0.92

9 9 3.8e-05 0.0019 18.0 3.4 1 23 490 513 490 513 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0068	0.34	10.9	0.6	2	23	229	251	228	251	0.95
2	9	0.00043	0.022	14.7	7.0	1	23	283	306	283	306	0.96
3	9	4.5e-05	0.0023	17.8	1.7	1	23	314	336	314	336	0.98
4	9	0.00015	0.0076	16.1	4.2	2	23	345	367	344	367	0.95
5	9	6e-06	0.0003	20.5	0.2	3	23	375	395	374	395	0.96
6	9	8.7e-05	0.0044	16.9	0.6	2	23	404	426	403	426	0.97
7	9	0.36	18	5.5	0.4	2	23	435	457	434	457	0.90
8	9	0.00019	0.0098	15.8	2.6	1	23	462	484	462	484	0.92
9	9	3.8e-05	0.0019	18.0	3.4	1	23	490	513	490	513	0.98

Sequence Information

Coding Sequence: ATGCTTTACGAGCAATGTTGTGTTTTATGCTTGGAAAATATTACGCCAATAGAAAGCAGAATAAATCTTAACATGGAGGATGCGATCTCTATAGAAGCACATAAAAGAATTGATAAACATTTCAAGGAAGAGCTACTCATCATGTCGAGTTTATCAACTAAATTTGTTTGCAATAAATGTTGGGAGTTGCTGGATTCATTCCATGAATTCTACATTCGTGTGCAAAACGCACATTTGGAAGCGCGCTATAAGCTTGAAGCACTGCAAGAATCTACAATAGCAGTTACAGAAATTAAGGTGGAAACGAATGATGTAGATGAATTGGCCACAACGTCAAATGAACGCAAGGAATGTGAAGAAAATAATGGAAGTGTAGAGCTATACACGAGTAAGGAAGAGATAATTGTGGgagaatttcatattaaaagtgAAGCGATATGTGACGAATCAAACCATTCAAATTGCGTTCCCTTGAACTCGTTAGTTGAGGATGATAGTAGCAATTCAATGAGCGAAGCCTTTCGTAGTTCTGTTTCCACCAATAATGTCGACAAAGCTGAACACAATTCattagaaaagaagaaaagtaaatttaaaaaaagaagaatgaaTACCACTAATGTGCACAGTGAACGCAATAAGACGTCGCACTATGATGATTTCAttgcgaaaaatttcaaattaacttgTTTTCTGTGTGAAAAATCTCTAATcgattttaaagaattaaaagttCACTATCGCGAACAGCATCAAACAAATGGATATGCCAAGTGCTGCGGCAAGAAATTATATAATCGTGGTATTCTCGTGGaccacatacatgtacataataATCCAGATTACTTCAAATGCCAACATTGCGATAAGGTTCTCTGTGATCGAAGTAGTCTCGAATCGCATTTGCAACACTTTCATGATTCCAACGAACGCATTGTATATAAATGCGATATTTGTTCTAAAGGGTTCTTTCGACGCAAAGTACTTACAAGACATTATCTAATACATGCTCCGGAGGAGCAGAAAACTGTTAAGTGCACTCAGTGTGAGAAAACATTCTGCAATCAATATTCCATGaaacaacatttaaatttaactcatctaaatttatatgcaaagaTTTGTGATATTTGCGgtaaatctttgaaaaataaagaagcatTACAACGACATCAAGAGGAACACGCTGGCGTTCAAAGATCCTCAGTACAATGTCAATTATGCAATGTTGAGCTCAAAACGCAATACGGCCTGACAAGACATATGAAAACGATGCACACCAAGGAGTATCAAACTCCACAAGTATGTCCAGTTTGCTCCAAAGTATCACCCACACTACGGGCGCATAAAAGCCACATGGAATATATGCATAGCGGAAAGAaacatatttgcaatatttgtgATAAGTCCTTCAAACTGCCTAATTGCTTAAGGgaGCATATGCCAACACACACTGGAGAAGTTTTGTACACTTGTACATTTTGTCCACaaacatttaattcaaaatcaaatatgtacGCACATCGTAAACGAAAACATCCGAAAGAATGGACGCAGAAATGCTCAAAGAAAAATCAGGTGGATACCATGGTAAAATATGCAGATGAAATAGAGCATGTATCCATAAACACGACTTTGAAAAaccaaacagaaaaaagtccagcgaattttttaaataccagACAAGACATTGCCGATACGACATAA
Protein Sequence: MLYEQCCVLCLENITPIESRINLNMEDAISIEAHKRIDKHFKEELLIMSSLSTKFVCNKCWELLDSFHEFYIRVQNAHLEARYKLEALQESTIAVTEIKVETNDVDELATTSNERKECEENNGSVELYTSKEEIIVGEFHIKSEAICDESNHSNCVPLNSLVEDDSSNSMSEAFRSSVSTNNVDKAEHNSLEKKKSKFKKRRMNTTNVHSERNKTSHYDDFIAKNFKLTCFLCEKSLIDFKELKVHYREQHQTNGYAKCCGKKLYNRGILVDHIHVHNNPDYFKCQHCDKVLCDRSSLESHLQHFHDSNERIVYKCDICSKGFFRRKVLTRHYLIHAPEEQKTVKCTQCEKTFCNQYSMKQHLNLTHLNLYAKICDICGKSLKNKEALQRHQEEHAGVQRSSVQCQLCNVELKTQYGLTRHMKTMHTKEYQTPQVCPVCSKVSPTLRAHKSHMEYMHSGKKHICNICDKSFKLPNCLREHMPTHTGEVLYTCTFCPQTFNSKSNMYAHRKRKHPKEWTQKCSKKNQVDTMVKYADEIEHVSINTTLKNQTEKSPANFLNTRQDIADTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00304007;
90% Identity: -
80% Identity: -