Ccap005840.1
Basic Information
- Insect
- Ceratitis capitata
- Gene Symbol
- Znf574
- Assembly
- GCA_000347755.4
- Location
- NW:220094-222661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0061 0.31 11.1 0.3 6 23 408 425 408 425 0.97 2 9 9e-05 0.0046 16.8 2.6 1 23 431 453 431 453 0.97 3 9 0.00078 0.04 13.9 0.5 1 23 465 488 465 488 0.95 4 9 0.00023 0.012 15.5 1.1 1 23 496 519 496 519 0.96 5 9 0.0029 0.15 12.1 1.6 3 23 527 547 525 547 0.78 6 9 0.009 0.46 10.5 0.6 2 23 559 581 558 581 0.96 7 9 0.0002 0.01 15.7 1.3 1 23 588 611 588 611 0.92 8 9 2.9e-06 0.00015 21.5 0.8 1 23 617 639 617 639 0.98 9 9 7.2e-05 0.0037 17.1 1.2 1 23 645 668 645 668 0.97
Sequence Information
- Coding Sequence
- ATGGTGTGCACTTTATGTCTAGAAGATGAATCAACTGTTGCACGCTTTGTTGGGATCTTCTCCAAGGAAGGTACTAATTGGGGTGTCGGCAGTATAATATCCCAACATCTGTGGTTAAAACTCGAGAAGGAGACTTGCGATGGTCAACGAATATGTTGGACGTGTTGGGAAGCTTTGCGagattttcatgtattttactTAAGAATAGCTGAGCTACATAATCATGTTGATTCAAAAAGGTTTAAAGTTATTAACGAGGAAGCTAATAAAGACCCATTTCTTCAAGATATCCAATTAAAGTCTGAGATTCAAAATGCAGAGCATAACTTAGAAATTCTTCATTCCTCGGACAACTTAGTTGCATCtgaagtAAAAATAGAGGTTCAGGAGTTCGAGTCGCTGGCTGCAATAGAAATCatcgaaagaaataaaactaaaggcATACAGCTGAGAAGTCGCCGTGGACGCCCTCGGAAAGTTAAGGATATAAAGGaggcaacaacaattaaatataataccaaTGCAATTACCTCATCTTCTATAGAAAACGACATTGATTCCGAAACCGAATTGCCTTTATCCATATTAATGAAAGACTCTACTCTAATTATTGGGATGAAAGAAAACAGATGCGCCTTAGAAGCTGCAGATGAACATGATGATATGATGGCTGGAATGAATGTTCCAAATAGCACAAGTGAACCTCTAAAAAGACGTAGGGGTAGacctaaaaaaaatgttgaaaacaaaattgtactTCCTTCCTCACATCCTGACAAAAAAGATAATGCAACGAGCTtggaaataaaagtagaaagttCCGCATTTGATAGCGATTTGGAATGCACTAATAATGCTCATGAAATAAGTTGTGAGATAGCCGGTATATCTGGAACAGACGATAGTGACAATTCAAGCAGCGACAACGAAGGATCTGACGACAGTTATGAACCAAAGCAGAAATATGCTTTCATACCAAAAAAGAAGGTGGTCAAACCTAAAAAATATCGGAAACGCGAGAAGCCACTTATTCCTGTTAAGCATAAGTCGCGTGAAGAAATCGAAGCAAGGAAGGCAGAACAAGAAGAGTACGAAAGggttattaaaagttttttcggtCAATTTATATGTCCAATATGTGAGGCGCTTGTGCATAATTTCACCGAGATACGTGAGCATTTCCGTTTTGCACATAATGTTGATCCGGGATATATGATGTGTTGTGGCCGTAAATTTACCCAGAGGAAATCATTAGCAgaacacatttatttacattggaATCCAGAACATTTTAAATGTAAGACATGTGGGCAAGTTTGCAATAACAGTCGAAATCTAACCGAACATGAAGAATCTCACATTGATCCAGATAAAGTGAAGGAAAAGAAGACTTTTCAGTGCGATGGATGTCAAAATGTATATGCTACTAAAGCAGCATTGCAGCAACACACATTTTCGAAACATGTACCAAAATCAGAATTTAAGCATGCATGCACCGAGTGCAATAAAAAacTACCAACAAGCCGGTCTCTTCAAGATCACGTCAAAACCGCTCATGGCCCACGAAGTACAGTTATATGTGACAAATGCGGCAAGCAAGTACGTAgtagttatttgaaaaaacatcacCAGTTAGAGCATTTCGATGAACCCCGCCCCACTCCTGAACCCCAACAATGTCAAATATGTGGTGCATGGCTTCGACATCAGGCTGGACTTAAACAACATATGAAATCTCTACACGAAGATGTGGGTGGCGAACATCGCTGCCAAATTTGTAACAAAGTTTCCACAAATGCTCGTGCTCTCAGACGACATGTTTATCTCAATCATGAATGTGAACGGAAATTCAAATGTACAATGTGTGAAAAAGCTTTCAAACGTCCACAAGATCTAAGAGAGCATACATCAGTACATACCGGAAAAGTGTTATACACTTGTCCTAATTGTCCAATGACATTCTTCTCCAGTGctaatatgtataaacataggCAGCGTTTACATCGCGCCCAATACGAAGCGGATAGAAAGAAACCACGGCATACTTTTAATATAATGGCGGAATCGAAAGGCCGAACAGAAGGAAAGCTTCCGAATACAAGTTCTAATTCTACTAACAGTgtctaa
- Protein Sequence
- MVCTLCLEDESTVARFVGIFSKEGTNWGVGSIISQHLWLKLEKETCDGQRICWTCWEALRDFHVFYLRIAELHNHVDSKRFKVINEEANKDPFLQDIQLKSEIQNAEHNLEILHSSDNLVASEVKIEVQEFESLAAIEIIERNKTKGIQLRSRRGRPRKVKDIKEATTIKYNTNAITSSSIENDIDSETELPLSILMKDSTLIIGMKENRCALEAADEHDDMMAGMNVPNSTSEPLKRRRGRPKKNVENKIVLPSSHPDKKDNATSLEIKVESSAFDSDLECTNNAHEISCEIAGISGTDDSDNSSSDNEGSDDSYEPKQKYAFIPKKKVVKPKKYRKREKPLIPVKHKSREEIEARKAEQEEYERVIKSFFGQFICPICEALVHNFTEIREHFRFAHNVDPGYMMCCGRKFTQRKSLAEHIYLHWNPEHFKCKTCGQVCNNSRNLTEHEESHIDPDKVKEKKTFQCDGCQNVYATKAALQQHTFSKHVPKSEFKHACTECNKKLPTSRSLQDHVKTAHGPRSTVICDKCGKQVRSSYLKKHHQLEHFDEPRPTPEPQQCQICGAWLRHQAGLKQHMKSLHEDVGGEHRCQICNKVSTNARALRRHVYLNHECERKFKCTMCEKAFKRPQDLREHTSVHTGKVLYTCPNCPMTFFSSANMYKHRQRLHRAQYEADRKKPRHTFNIMAESKGRTEGKLPNTSSNSTNSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045725;
- 90% Identity
- -
- 80% Identity
- -